pephco / quickLDLinks
quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.
☆10Updated 3 years ago
Alternatives and similar repositories for quickLD
Users that are interested in quickLD are comparing it to the libraries listed below
Sorting:
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Nanopore data analysis in R☆40Updated 2 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated 2 months ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A catalogue of available long read sequencing data analysis tools☆83Updated this week
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Evolutionary Transcriptomics with R☆47Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Tutorials for bioinformatics and data analysis related to landscape genomics☆29Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Shiny apps for teaching Population Genetics☆66Updated 2 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 2 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆94Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- ☆31Updated 3 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- ☆98Updated 4 years ago
- A library for running k-mers based GWAS☆123Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago