pephco / quickLDLinks
quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.
☆10Updated 3 years ago
Alternatives and similar repositories for quickLD
Users that are interested in quickLD are comparing it to the libraries listed below
Sorting:
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Methods for examining PCA locally along the genome.☆83Updated 11 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆88Updated 2 years ago
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆53Updated this week
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 9 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆53Updated 8 months ago
- Evolutionary Transcriptomics with R☆45Updated this week
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Tutorials for bioinformatics and data analysis related to landscape genomics☆29Updated 6 years ago
- GWAS software that can handle autopolyploids☆28Updated 10 months ago
- Nanopore data analysis in R☆40Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 4 months ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated last month
- Estimating Effective Migration Surfaces☆103Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆10Updated 4 years ago
- ☆30Updated 2 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- a bash pipeline for RAD sequencing☆55Updated 6 months ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated last week
- A pipeline to generate a phylogenetic tree from huge SNP data☆89Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago