Alternatives and similar repositories for quickLD:

Users that are interested in quickLD are comparing it to the libraries listed below

• hemstrow / snpR
  ☆29Updated this week
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• Popgen48 / scalepopgen
  ☆22Updated 10 months ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated last year
• ulasisik / balancing-selection
  ☆13Updated 3 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆16Updated this week
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆20Updated 4 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 10 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆55Updated 2 months ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• ANGSD / NgsRelate
  ☆43Updated last year
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆31Updated 9 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• MyersGroup / relate
  Software for estimating genome-wide genealogies for thousands of samples
  ☆29Updated 3 months ago
• regevs / gamma_smc
  ☆18Updated last year
• mijangos81 / PopGenR
  Population Genomics in R workshop
  ☆12Updated 10 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆27Updated 3 months ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated last week
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last month
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆13Updated 2 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago