andrewkern / popGenMachineLearningExamples
simple examples of using supervised machine learning for population genetics inference
☆38Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for popGenMachineLearningExamples
- ☆21Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated last year
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆64Updated 6 years ago
- web documentation for Trinotate☆48Updated last year
- Shiny apps for teaching Population Genetics☆58Updated last year
- Genome Annotation Without Nightmares☆43Updated last year
- ☆9Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- ☆41Updated 11 years ago
- Synteny Imager☆60Updated 2 months ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆32Updated 11 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 2 months ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆31Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- Estimate recombination rates from population genetic data☆59Updated 4 years ago
- Pinpoints the mutation favored by selection☆32Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- A (very) simple script to QC Hi-C data.☆25Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Updated last year
- Tools and Utilities for msmc and msmc2☆45Updated last year
- Scripts to calculate population genetics statistics☆53Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- feature-based deep learning for the identification of selective sweeps☆50Updated 2 months ago
- a bash pipeline for RAD sequencing☆52Updated 6 months ago
- ☆35Updated last year