andrewkern / popGenMachineLearningExamples
simple examples of using supervised machine learning for population genetics inference
☆38Updated 7 years ago
Alternatives and similar repositories for popGenMachineLearningExamples:
Users that are interested in popGenMachineLearningExamples are comparing it to the libraries listed below
- ☆21Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Updated 8 years ago
- Shiny apps for teaching Population Genetics☆62Updated 2 years ago
- ☆61Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Synteny Imager☆60Updated 5 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆56Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 6 months ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆34Updated last year
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- Genome Annotation Without Nightmares☆43Updated 3 weeks ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆53Updated 2 weeks ago
- Nanopore data analysis in R☆38Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- ☆42Updated 11 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆33Updated 9 months ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆33Updated 8 months ago
- A pipeline that accepts a VCF file to run through Admixture☆57Updated last month
- web documentation for Trinotate☆48Updated 2 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 4 months ago
- feature-based deep learning for the identification of selective sweeps☆51Updated 2 weeks ago