simple examples of using supervised machine learning for population genetics inference
☆39Oct 26, 2017Updated 8 years ago
Alternatives and similar repositories for popGenMachineLearningExamples
Users that are interested in popGenMachineLearningExamples are comparing it to the libraries listed below
Sorting:
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Shiny apps for teaching Population Genetics☆67Feb 4, 2023Updated 3 years ago
- Advanced Vegan Workshop for ESA☆18Aug 7, 2017Updated 8 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- ☆20Sep 10, 2020Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Aug 16, 2017Updated 8 years ago
- ☆21Apr 14, 2019Updated 6 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- Population and Evolutionary Genetics Analysis System☆29Dec 4, 2025Updated 3 months ago
- ☆15Jul 17, 2019Updated 6 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last week
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 7 years ago
- Open Plant Pathology website☆21Oct 1, 2024Updated last year
- ☆15Jun 12, 2020Updated 5 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆213Updated this week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Fast gradient-based optimization of resistance surfaces☆15Jul 9, 2020Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 11 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Nov 21, 2025Updated 3 months ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Vignettes for Population Genetics in R☆26Aug 11, 2020Updated 5 years ago
- Forward-time simulation in Python using fwdpp☆31Mar 3, 2026Updated 2 weeks ago