cytolab / MEM-examples
Marker Enrichment Modeling (MEM)
☆12Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for MEM-examples
- ☆53Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 4 months ago
- Testing differences in cell type proportions from single-cell data.☆94Updated last week
- R package for pre-processing of mass and flow cytometry data☆42Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆89Updated this week
- scDataviz: single cell dataviz and downstream analyses☆61Updated 3 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆113Updated 2 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- ☆56Updated 6 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- An R interface to enrichR☆77Updated 7 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆67Updated 2 weeks ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Tools for single-cell data processing☆118Updated 5 months ago
- An R interface to the MEME Suite☆46Updated last month
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 3 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆73Updated 6 months ago
- ☆59Updated last year
- ☆55Updated 4 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆158Updated 3 months ago
- ☆67Updated 6 years ago
- Toolkit for Single-Cell Velocity☆55Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- A Shiny web app for mapping datasets using Seurat v4☆112Updated 2 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆79Updated 2 months ago
- R package for single cell and other data analysis using diffusion maps☆77Updated this week
- Cytometry dATa anALYsis Tools☆66Updated last month