Alternatives and similar repositories for tatami

Users that are interested in tatami are comparing it to the libraries listed below

• StoreyLab / lfa
  logistic factor analysis
  ☆16Updated 7 months ago
• cole-trapnell-lab / leidenbase
  ☆13Updated 7 months ago
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated last year
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 4 months ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 2 months ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated last month
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• stephenslab / poisson.mash.alpha
  An R package for Poisson multivariate adaptive shrinkage.
  ☆11Updated last year
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 7 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 2 weeks ago
• cozygene / refactor
  ☆25Updated 6 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• deruncie / GridLMM
  GridLMM package
  ☆39Updated last month
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• ryanlayer / ssec2
  Stupid Simple Elastic Compute Cloud
  ☆16Updated last year
• pachterlab / lair
  home of the bear's lair
  ☆10Updated 8 years ago
• Bioconductor / BiocFileCache
  Manage Files Across Sessions
  ☆13Updated 2 weeks ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆39Updated 2 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated 2 years ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• BiocPy / rds2py
  Read RDS files, in Python
  ☆26Updated last week
• davismcc / workshop-scRNAseq-oxford-sep2016
  scRNA-seq workshop in Oxford on 9 September 2016
  ☆11Updated 9 years ago
• PeteHaitch / DelayedMatrixStats
  A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
  ☆15Updated 6 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 11 months ago
• stephenslab / ldshrink
  ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
  ☆13Updated 4 years ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last week