Alternatives and similar repositories for reComBat:

Users that are interested in reComBat are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆45Updated 3 weeks ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆43Updated 5 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 2 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 5 months ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 6 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆24Updated this week
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆71Updated last month
• jishnu-lab / SLIDE
  ☆26Updated last month
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• suinleelab / contrastiveVI
  ☆53Updated 11 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 6 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 3 weeks ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 5 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆51Updated 5 months ago
• theislab / scTab
  ☆57Updated 6 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 3 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆19Updated last week
• cellatlas / human
  ☆42Updated 4 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 months ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• PeterZZQ / CellPath
  ☆20Updated 2 years ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆32Updated this week
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆40Updated 2 weeks ago
• PMBio / deeprvat
  ☆38Updated last week
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• marcovito / sma
  ☆13Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 4 months ago