Alternatives and similar repositories for reComBat

Users that are interested in reComBat are comparing it to the libraries listed below

• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆56Updated this week
• epigenelabs / pyComBat
  pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …
  ☆89Updated last year
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆122Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆59Updated 8 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆27Updated 8 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆36Updated last year
• gregbellan / Stabl
  ☆68Updated last year
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated last year
• harryhaller001 / keggtools
  Library for KEGG pathway enrichment analysis
  ☆18Updated last week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆32Updated 2 years ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆69Updated last year
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated last year
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆50Updated 5 months ago
• jishnu-lab / SLIDE
  ☆30Updated 7 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• lilab-bcb / harmony-pytorch
  ☆62Updated 8 months ago
• theislab / scTab
  ☆62Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• WangPeng-Lab / scGCO
  Single-cell Graph Cuts Optimization
  ☆16Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages
  ☆32Updated this week
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆22Updated 2 years ago
• GET-Foundation / gcell
  Python playground for cell-type-specific biology
  ☆12Updated last week
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last year
• laolintou / scPEFT
  ☆11Updated last year
• SpielmannLab / STIGMA
  ☆10Updated last month
• Maarten-vd-Sande / qnorm
  Fast-ish (and correct!) quantile normalization in Python.
  ☆31Updated 7 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 2 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 2 weeks ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated 8 months ago