BorgwardtLab / reComBatLinks
reComBat package to correct batch effects
☆12Updated 2 years ago
Alternatives and similar repositories for reComBat
Users that are interested in reComBat are comparing it to the libraries listed below
Sorting:
- Multi-omics factor analysis v2☆47Updated 9 months ago
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆101Updated this week
- ☆26Updated 2 months ago
- Work with trained factor models in Python☆33Updated 9 months ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 2 weeks ago
- Fast-ish (and correct!) quantile normalization in Python.☆31Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- A python package for chromVAR☆28Updated 2 years ago
- ☆63Updated 8 months ago
- ☆27Updated 2 months ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 9 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last week
- ☆55Updated 2 months ago
- pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …☆87Updated last year
- ☆23Updated 11 months ago
- Multi-modal single cell analysis pipelines☆59Updated 3 weeks ago
- Information-based dimensionality reduction☆29Updated 7 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated 10 months ago
- Single-cell Graph Cuts Optimization☆16Updated last year
- Tutorials for multimodal omics data analysis☆16Updated 5 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆26Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated 2 months ago
- Python playground for cell-type-specific biology☆12Updated last month
- Library for KEGG pathway enrichment analysis☆16Updated 2 months ago
- ☆13Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago
- bioinformatics plotting and tools☆59Updated last year
- ☆59Updated 10 months ago