Alternatives and similar repositories for reComBat:

Users that are interested in reComBat are comparing it to the libraries listed below

• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆68Updated 2 weeks ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 3 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆41Updated last week
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 5 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆24Updated 4 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆23Updated last month
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆40Updated 4 months ago
• marcovito / sma
  ☆13Updated last year
• gregbellan / Stabl
  ☆54Updated 3 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 11 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated last month
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆22Updated this week
• jishnu-lab / SLIDE
  ☆26Updated this week
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆13Updated 2 years ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆34Updated 2 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated 4 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆38Updated 4 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated 3 weeks ago
• theislab / scTab
  ☆56Updated 5 months ago
• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆11Updated last month
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆25Updated 11 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 3 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆32Updated this week
• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆28Updated last month
• cellatlas / human
  ☆42Updated 3 months ago
• theislab / prophet
  ☆28Updated last month