Alternatives and similar repositories for reComBat:

Users that are interested in reComBat are comparing it to the libraries listed below

• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆63Updated last week
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆39Updated 2 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆30Updated 2 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆23Updated this week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆41Updated 5 months ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆39Updated 2 weeks ago
• lilab-bcb / harmony-pytorch
  ☆50Updated last year
• timyerg / venny4py
  ☆16Updated 4 months ago
• theislab / scTab
  ☆56Updated 4 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated last month
• theislab / prophet
  ☆27Updated 3 weeks ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆42Updated last week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆20Updated 2 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆19Updated last week
• marcovito / sma
  ☆13Updated last year
• cellatlas / human
  ☆42Updated 2 months ago
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated 2 years ago
• raphael-group / GASTON
  ☆20Updated 4 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated 2 weeks ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 8 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last month
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆41Updated 4 months ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆35Updated last week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated last week
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 2 months ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆23Updated 3 months ago
• gregbellan / Stabl
  ☆52Updated 2 months ago