Alternatives and similar repositories for Stabl:

Users that are interested in Stabl are comparing it to the libraries listed below

• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆49Updated 3 weeks ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 8 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆28Updated last year
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆87Updated 3 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated this week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆41Updated last week
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆62Updated this week
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆52Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆77Updated last year
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 6 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆39Updated 3 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆65Updated this week
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆70Updated 9 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆78Updated 3 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆53Updated last year
• saeyslab / moduledetection-evaluation
  ☆31Updated 3 years ago
• KChen-lab / METAFlux
  ☆57Updated 7 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆45Updated 4 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 6 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆33Updated 2 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆69Updated this week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 2 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆64Updated 7 months ago
• lanagarmire / Asgard
  ☆41Updated last year
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆29Updated 4 years ago