gregbellan / StablLinks
☆66Updated last year
Alternatives and similar repositories for Stabl
Users that are interested in Stabl are comparing it to the libraries listed below
Sorting:
- Multi-omics factor analysis v2☆54Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 7 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated this week
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Work with trained factor models in Python☆36Updated last year
- pseudobulking on an AnnData object☆34Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- A docker image for single-cell analysis☆103Updated 2 months ago
- ☆44Updated last year
- Geometry-preserving random sampling☆95Updated last year
- R package to access DoRothEA's regulons☆152Updated last year
- Easily install and load packages from the tidyomics ecosystem☆72Updated 2 months ago
- ☆61Updated 7 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated 3 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆102Updated 3 weeks ago
- ☆61Updated 4 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆110Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- AnnData interoperability in R☆138Updated 3 weeks ago
- Latent Embedding Multivariate Regression☆98Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆26Updated 3 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆30Updated last year
- ☆62Updated 5 years ago
- From geospatial to spatial -omics☆100Updated last month
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 2 weeks ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago