gregbellan / Stabl
☆43Updated 3 months ago
Related projects: ⓘ
- Single cell omics biology annotations☆45Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆35Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆48Updated last month
- ☆15Updated 3 years ago
- Gene group activity utility functions for Scanpy☆49Updated last month
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆74Updated 3 weeks ago
- pseudobulking on an AnnData object☆23Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆55Updated 3 months ago
- Spatial transcriptomics analyses and decoding in R☆17Updated 2 weeks ago
- Explore and download data from the recount3 project☆31Updated 4 months ago
- cTPnet Package☆23Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated last month
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- ☆37Updated 3 weeks ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- ☆47Updated 8 months ago
- metadata and data from the database☆36Updated 4 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆56Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 11 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- Cell type pipes for R☆51Updated 7 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆26Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- An R package for handling and analysing imaging mass cytometry data☆20Updated 2 months ago
- R implementation of GeneTrajectory☆44Updated 5 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆43Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆32Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆20Updated last year
- ☆44Updated last month
- Estimate microRNA activity in single cells☆10Updated 2 years ago