Alternatives and similar repositories for Stabl

Users that are interested in Stabl are comparing it to the libraries listed below

• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆32Updated 3 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆81Updated 3 weeks ago
• lilab-bcb / harmony-pytorch
  ☆54Updated last month
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 10 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆91Updated 7 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆88Updated 11 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆82Updated this week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆75Updated 3 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 months ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆45Updated 8 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated last month
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆71Updated 4 months ago
• elixir-europe-training / ELIXIR-SCO-spatial-omics
  ☆38Updated 2 months ago
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆37Updated 2 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆97Updated 3 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆73Updated 5 months ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆47Updated 7 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated last year
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated this week
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• omnideconv / SimBu
  Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
  ☆17Updated last month
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆73Updated last month
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated last week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆87Updated 7 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 3 years ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆75Updated 3 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆67Updated last year