pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, in microarray expression data.
☆90Feb 24, 2024Updated 2 years ago
Alternatives and similar repositories for pyComBat
Users that are interested in pyComBat are comparing it to the libraries listed below
Sorting:
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆130Mar 2, 2026Updated 2 weeks ago
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆15Oct 30, 2023Updated 2 years ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆203Sep 24, 2020Updated 5 years ago
- A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)☆18Mar 1, 2026Updated 2 weeks ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Dec 31, 2018Updated 7 years ago
- ☆26Apr 3, 2019Updated 6 years ago
- ☆14Mar 26, 2024Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆71Dec 19, 2022Updated 3 years ago
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- ☆14Feb 4, 2026Updated last month
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A Python implementation of edgeR for differential expression analysis☆104Mar 21, 2019Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆20Mar 4, 2026Updated 2 weeks ago
- ☆18Aug 22, 2021Updated 4 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 7 months ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 9 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆63Feb 1, 2021Updated 5 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 3 months ago
- Harmonization of multi-site imaging data with ComBat (Python)☆166Apr 20, 2023Updated 2 years ago
- ☆38Feb 9, 2026Updated last month
- ☆15Feb 28, 2022Updated 4 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 4 months ago
- Evaluation Toolkit for Machine Learning Model Understanding☆11Mar 25, 2025Updated 11 months ago
- XiSearch☆16Jan 27, 2026Updated last month
- ☆29Sep 4, 2023Updated 2 years ago
- Annotated data.☆720Updated this week
- Python OncoPrint library based on Matplotlib☆25Sep 23, 2025Updated 5 months ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated 8 months ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated last year
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- ☆13Mar 10, 2026Updated last week