pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, in microarray expression data.
☆90Feb 24, 2024Updated 2 years ago
Alternatives and similar repositories for pyComBat
Users that are interested in pyComBat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆132Mar 2, 2026Updated last month
- Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects☆15Oct 30, 2023Updated 2 years ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆202Sep 24, 2020Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)☆18Apr 1, 2026Updated last week
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆106Dec 31, 2018Updated 7 years ago
- ☆26Apr 3, 2019Updated 7 years ago
- ☆14Mar 26, 2024Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆72Dec 19, 2022Updated 3 years ago
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- ☆14Feb 4, 2026Updated 2 months ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A Python implementation of edgeR for differential expression analysis☆104Mar 21, 2019Updated 7 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 7 months ago
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 10 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆63Feb 1, 2021Updated 5 years ago
- Harmonization of multi-site imaging data with ComBat (Python)☆171Apr 20, 2023Updated 2 years ago
- ☆38Mar 30, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 5 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- XiSearch☆16Jan 27, 2026Updated 2 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Annotated data.☆729Updated this week
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated 8 months ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆39Mar 10, 2025Updated last year
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- ☆13Mar 20, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆13Jul 11, 2023Updated 2 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆41Apr 30, 2025Updated 11 months ago
- Gene Set Enrichment Analysis in Python☆697Updated this week
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Jul 4, 2020Updated 5 years ago