libsequence: a C++ class library for evolutionary genetic analysis
☆52Jul 3, 2020Updated 5 years ago
Alternatives and similar repositories for libsequence
Users that are interested in libsequence are comparing it to the libraries listed below
Sorting:
- ☆12May 6, 2022Updated 3 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Oct 7, 2021Updated 4 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 3 months ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- A general-purpose forward-time population genetics simulation environment.☆36Feb 4, 2026Updated last month
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- Example of SGTK application for E.coli dataset:☆31Jul 13, 2020Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- ☆42Jan 19, 2024Updated 2 years ago
- Implementation of the multiple sequential markovian coalescent☆91Aug 5, 2025Updated 7 months ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 2 years ago
- Mirror kept for legacy. Moved to https://github.com/llvm/llvm-project☆17Dec 14, 2016Updated 9 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 5 years ago
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Jul 23, 2021Updated 4 years ago
- Convenience function for quick and dirty data analysis☆69Oct 30, 2017Updated 8 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- A Jekyll version of the "Multiverse" theme by HTML5 UP.☆10Dec 10, 2022Updated 3 years ago
- A Python library for reading and writing PacBio® data files☆41Mar 6, 2026Updated 2 weeks ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- A Simulink Like IDE for C++，based on nana gui.☆10Jul 12, 2017Updated 8 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 4 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- A Jekyll theme for organizations & non-profits☆11Sep 25, 2016Updated 9 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- Bryan talk at JSM 2015 re: are statisticians data scientists☆18Oct 30, 2015Updated 10 years ago
- SeqAn's official repository.☆500Updated this week