molpopgen / libsequenceLinks
libsequence: a C++ class library for evolutionary genetic analysis
☆53Updated 4 years ago
Alternatives and similar repositories for libsequence
Users that are interested in libsequence are comparing it to the libraries listed below
Sorting:
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆27Updated 3 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- A C++14 library for NGS data formats☆40Updated 5 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated this week
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆34Updated 3 weeks ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- BioC++ core library (alphabet, meta, ranges)☆19Updated last year
- k8 Javascript shell☆157Updated 9 months ago
- Structural variant detection and association testing☆107Updated 2 years ago
- Simply feedforward neural network☆19Updated 8 years ago
- reference-guided aligner for next-generation sequencing technologies☆55Updated 8 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆80Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆168Updated last year
- Squared distance for anchored alignment joiner of ea-utils.☆9Updated 7 years ago
- ♥ Essential Functions for DNA Manipulation☆20Updated last month
- C++ library for parsing several formats in bioinformatics☆9Updated 2 years ago
- Tutorial on programming or "big data"/bioinformatics☆32Updated 7 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆59Updated last week
- ☆68Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Alignment editor for Mac OS X☆29Updated 7 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- micro-read Fast Alignment Search Tool☆19Updated 5 years ago
- Detect recombination hotspots using population genetic data.☆17Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 4 months ago
- libstrbuf: A powerful string library for C☆17Updated 8 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago