libsequence: a C++ class library for evolutionary genetic analysis
☆54Jul 3, 2020Updated 6 years ago
Alternatives and similar repositories for libsequence
Users that are interested in libsequence are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆28Oct 7, 2021Updated 4 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 7 months ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A general-purpose forward-time population genetics simulation environment.☆37Feb 4, 2026Updated 5 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- The Network project is a C++ encapsulation of WinSock2 to form a lightweight network library; The Graphics project is a C++ encapsulation…☆13Oct 31, 2017Updated 8 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆20Oct 28, 2024Updated last year
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 5 months ago
- Simple examples of Monte Carlo and MCMC☆20May 14, 2014Updated 12 years ago
- Example of SGTK application for E.coli dataset:☆31Jul 13, 2020Updated 6 years ago
- ☆43Jan 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated 11 months ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 2 years ago
- Mirror kept for legacy. Moved to https://github.com/llvm/llvm-project☆17Dec 14, 2016Updated 9 years ago
- Boost.org property_map module☆17Jul 13, 2026Updated last week
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Jul 23, 2021Updated 4 years ago
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 6 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- A Jekyll version of the "Multiverse" theme by HTML5 UP.☆11Dec 10, 2022Updated 3 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- A Python library for reading and writing PacBio® data files☆41May 21, 2026Updated 2 months ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- ☆15Aug 28, 2014Updated 11 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Convenience function for quick and dirty data analysis☆69Oct 30, 2017Updated 8 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- A Simulink Like IDE for C++，based on nana gui.☆10Jul 12, 2017Updated 9 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- A Jekyll theme for organizations & non-profits☆11Sep 25, 2016Updated 9 years ago
- A collection of usefull tools for RAD or GBS data analysis☆33Mar 14, 2025Updated last year