FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter i…
☆14Oct 14, 2025Updated 10 months ago
Alternatives and similar repositories for ffpopsim
Users that are interested in ffpopsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Aug 6, 2026Updated 3 weeks ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 6 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 4 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Introduction to Python 3☆12Dec 4, 2018Updated 7 years ago
- Datasets for https://github.com/nextstrain/nextclade☆47Aug 19, 2026Updated 2 weeks ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 6 months ago
- intuitive software for ecological and environmental meta-analysis☆14Nov 14, 2016Updated 9 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- A general-purpose forward-time population genetics simulation environment.☆37Feb 4, 2026Updated 6 months ago
- ☆15Mar 12, 2018Updated 8 years ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Nextstrain build for mpox virus☆50Updated this week
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- ☆16Jun 14, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rescale genetic polymorphism data to match a common sample size.☆15Nov 4, 2021Updated 4 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated 2 months ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 4 years ago
- Replication materials for "Identifying the Development and Application of Artificial Intelligence in Scientific Text"☆14Feb 18, 2020Updated 6 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated last year