neherlab / ffpopsimLinks
FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter i…
☆14Updated 3 months ago
Alternatives and similar repositories for ffpopsim
Users that are interested in ffpopsim are comparing it to the libraries listed below
Sorting:
- Fishers Exact Test for Python (Cython)☆67Updated 10 months ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 9 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- Python library to simulate evolutionary sequence data☆80Updated 4 years ago
- The command-line interface to GGD☆43Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated 2 years ago
- ☆14Updated 3 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Updated this week
- Histosketching Using Little Kmers☆56Updated 2 years ago
- A collection of documented examples using TreeTime☆22Updated 6 years ago
- ☆36Updated 9 months ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆26Updated 2 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆53Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last month
- Demonstrating best practices for bioinformatics command line tools☆25Updated 5 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated last year
- Genetics training camp☆21Updated 5 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- Prediction fitness of leaves on a genealogical tree☆12Updated 10 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago