neherlab / ffpopsimLinks
FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter i…
☆14Updated 4 months ago
Alternatives and similar repositories for ffpopsim
Users that are interested in ffpopsim are comparing it to the libraries listed below
Sorting:
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 6 months ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- A better, faster way to count guides in CRISPR screens.☆33Updated 5 months ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- A collection of documented examples using TreeTime☆23Updated 6 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated 3 weeks ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 2 months ago
- ☆37Updated 5 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last month
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- ☆16Updated 8 months ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- ☆14Updated 3 years ago
- SRA python tools☆11Updated 4 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- 🧬 Viral genome reference alignment☆12Updated 4 years ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated 3 weeks ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago