FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter i…
☆14Oct 14, 2025Updated 5 months ago
Alternatives and similar repositories for ffpopsim
Users that are interested in ffpopsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualise networks and trees in Python, with style.☆86Feb 20, 2026Updated last month
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Apr 29, 2022Updated 3 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 5 years ago
- ☆13Nov 26, 2025Updated 3 months ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- ☆15Jan 10, 2023Updated 3 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Jun 12, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 5 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated 3 weeks ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 4 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Datasets for https://github.com/nextstrain/nextclade☆44Mar 6, 2026Updated 2 weeks ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated last month
- intuitive software for ecological and environmental meta-analysis☆14Nov 14, 2016Updated 9 years ago
- ☆15Mar 12, 2018Updated 8 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- A general-purpose forward-time population genetics simulation environment.☆36Feb 4, 2026Updated last month
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Nov 30, 2014Updated 11 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- ☆16Jun 14, 2017Updated 8 years ago
- Perform inference on algorithm-agnostic variable importance☆24Sep 25, 2025Updated 5 months ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 10 months ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago