GUI for creating bioinformatics workflows from Docker containers:
☆66Jun 2, 2025Updated 10 months ago
Alternatives and similar repositories for BioDepot-workflow-builder
Users that are interested in BioDepot-workflow-builder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Serverless Application Analytics Framework☆40Dec 3, 2025Updated 4 months ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Rapid RNA-seq pipeline using AWS lambda functions for alignment☆13Mar 22, 2019Updated 7 years ago
- Website about the project WorkflowHub☆12Feb 12, 2026Updated 2 months ago
- a place for GA4GH-related wiki pages☆17Aug 3, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Motif Scan and Enrichment Analysis (MoSEA)☆17Oct 6, 2020Updated 5 years ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Comprehensive resistance detection from WGS data☆19Mar 23, 2026Updated 3 weeks ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Trigger CWL workflows via GA4GH WES and TES☆18Jan 19, 2026Updated 3 months ago
- A Jupyter Notebook extension for Docker☆15Sep 2, 2019Updated 6 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- ☆13Jun 22, 2017Updated 8 years ago
- Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP☆11Updated this week
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 5 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Runs CQL phenotype definitions against an OMOP repository☆12Apr 14, 2023Updated 3 years ago
- A FUSE interface to the NCBI Sequence Read Archive (SRA)☆31Jan 29, 2020Updated 6 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆80Mar 25, 2025Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- ☆11Dec 31, 2021Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Course Materials for the MMCi Practical Data Science Course☆19Apr 10, 2020Updated 6 years ago
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆20Mar 14, 2026Updated last month
- ☆12Dec 13, 2022Updated 3 years ago
- ☆10May 14, 2025Updated 11 months ago
- ☆18Jan 29, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13May 17, 2023Updated 2 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- ☆10Jul 17, 2023Updated 2 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated last month
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago