BioDepot / BioDepot-workflow-builder
GUI for creating bioinformatics workflows from Docker containers:
☆64Updated last week
Related projects ⓘ
Alternatives and complementary repositories for BioDepot-workflow-builder
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- GA4GH Variation Representation Python Implementation☆51Updated this week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆76Updated 4 months ago
- The GenePattern Server web application☆35Updated last week
- Rich IDE support for Workflow Description Language☆42Updated 4 months ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- Streamlining SLAM-seq analysis with ultra-high sensitivity☆39Updated 6 months ago
- ☆61Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆46Updated 5 years ago
- Efficient handling of FASTQ files from Python☆50Updated 2 months ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 2 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 4 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- SevenBridges Python Api bindings☆46Updated last month
- GTEx Visualizations☆64Updated 3 years ago
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 9 months ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated 3 months ago
- Library for manipulating genomic variants and predicting their effects☆81Updated 4 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆54Updated 3 weeks ago
- ☆35Updated last year
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated last month
- A Python library for interacting with the Galaxy API☆85Updated 2 weeks ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated last month
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 2 weeks ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago