MaayanLab / biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
☆112Updated 4 months ago
Alternatives and similar repositories for biojupies:
Users that are interested in biojupies are comparing it to the libraries listed below
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆100Updated 2 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 8 years ago
- Transcript quantification import for modular pipelines☆137Updated last year
- microRNA profiling pipeline☆75Updated 3 years ago
- MOODS: Motif Occurrence Detection Suite☆96Updated last year
- Python biomart API☆65Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 4 months ago
- Tools for processing UMI RNA-tag data☆129Updated 2 years ago
- ☆67Updated 6 years ago
- integrated RNA-seq Analysis Pipeline☆85Updated 6 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆147Updated 2 years ago
- ☆116Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- A Python-based EGA download client☆98Updated 6 months ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆82Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆67Updated this week
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A tool for bigWig files.☆119Updated 6 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- A Python implementation of edgeR for differential expression analysis☆102Updated 6 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆111Updated last year
- New user☆42Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago