Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
☆119Jun 9, 2025Updated last year
Alternatives and similar repositories for biojupies
Users that are interested in biojupies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Jul 16, 2025Updated 10 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50May 28, 2019Updated 7 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆105Jul 1, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆21Apr 24, 2019Updated 7 years ago
- R Shiny web-app for integrated metabolic network analysis☆11Aug 11, 2022Updated 3 years ago
- SPARCED model creation and simulation package.☆12Oct 7, 2025Updated 8 months ago
- ☆17May 15, 2024Updated 2 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated 11 months ago
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- ☆13Apr 22, 2021Updated 5 years ago
- Make rapid visualizations of RNA-seq data in R☆20Oct 7, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A catalog of appyter notebooks☆42May 19, 2026Updated 3 weeks ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- 🍊🔬 Orange add-on for gene expression of single cell data☆17May 8, 2026Updated last month
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆46Nov 24, 2025Updated 6 months ago
- An interactive web-tool for RNA-seq analysis☆70May 21, 2026Updated 3 weeks ago
- jinja2-enabled jupyter notebooks☆37Feb 13, 2026Updated 4 months ago
- Slides and other materials from talks I have given☆33Feb 18, 2021Updated 5 years ago
- Visual exploratory analysis of gene expression data☆46Apr 8, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆27Apr 13, 2025Updated last year
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆36Mar 9, 2026Updated 3 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆115Dec 18, 2025Updated 5 months ago
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆123May 28, 2020Updated 6 years ago
- RNA-Seq analysis workflow☆105Jul 14, 2021Updated 4 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated last month
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆86Jun 4, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆13May 26, 2026Updated 2 weeks ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Aug 23, 2018Updated 7 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Apr 17, 2020Updated 6 years ago