MaayanLab / biojupiesLinks
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
☆119Updated 4 months ago
Alternatives and similar repositories for biojupies
Users that are interested in biojupies are comparing it to the libraries listed below
Sorting:
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆103Updated 3 years ago
- Python biomart API☆69Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- A Python-based EGA download client☆107Updated last year
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆106Updated 2 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- ☆56Updated last week
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- MyGene.info: A BioThings API for gene annotations☆128Updated last month
- Documentation of the Snakemake-Workflows project☆155Updated 3 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆60Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆94Updated 4 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆121Updated 3 weeks ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 10 months ago
- Genome-scale design tool for oligo hybridization probes☆63Updated 4 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago