MaayanLab / biojupiesLinks
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
☆119Updated 7 months ago
Alternatives and similar repositories for biojupies
Users that are interested in biojupies are comparing it to the libraries listed below
Sorting:
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆103Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Python biomart API☆69Updated 2 years ago
- Transcript quantification import for modular pipelines☆143Updated 3 months ago
- MyGene.info: A BioThings API for gene annotations☆130Updated 4 months ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆105Updated 2 years ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆69Updated last week
- A Python-based EGA download client☆110Updated last year
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 3 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- IPAW: a Nextflow workflow for proteogenomics☆29Updated last year
- Documentation of the Snakemake-Workflows project☆156Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- Disease Ontology Semantic and Enrichment analysis☆123Updated last week
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 6 years ago
- ☆35Updated 9 years ago
- ☆57Updated last week
- A catalog of appyter notebooks☆41Updated last month
- A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.☆163Updated 8 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago