VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
☆37Jun 30, 2021Updated 4 years ago
Alternatives and similar repositories for VAPr
Users that are interested in VAPr are comparing it to the libraries listed below
Sorting:
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- A simple observation count database☆11Jan 13, 2026Updated last month
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 8 months ago
- structural variant database software☆47Feb 16, 2026Updated 2 weeks ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 4 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- ☆44Sep 10, 2024Updated last year
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- Biopet docs☆17Aug 2, 2018Updated 7 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Dec 27, 2022Updated 3 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Feb 14, 2026Updated 2 weeks ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated last year
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 26, 2026Updated last week
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 9 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago