ucsd-ccbb / VAPrLinks
VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
☆36Updated 4 years ago
Alternatives and similar repositories for VAPr
Users that are interested in VAPr are comparing it to the libraries listed below
Sorting:
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- Generic human DNA variant annotation pipeline☆59Updated last year
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆55Updated last week
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 10 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last week
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last week
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- ☆69Updated 3 years ago
- Example project for integrating igv.js and flask☆26Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago