ucsd-ccbb / VAPrLinks
VAPr: A Python package for NoSQL variant data storage, annotation and prioritization
☆37Updated 4 years ago
Alternatives and similar repositories for VAPr
Users that are interested in VAPr are comparing it to the libraries listed below
Sorting:
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Example project for integrating igv.js and flask☆26Updated 6 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated this week
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Updated 4 years ago
- Simple vcf parser, based on PyVCF☆47Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year