bioconda / bioconda-utilsLinks
Utilities for building and managing bioconda recipes
☆102Updated last week
Alternatives and similar repositories for bioconda-utils
Users that are interested in bioconda-utils are comparing it to the libraries listed below
Sorting:
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆230Updated last month
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Viral genomics analysis pipelines☆195Updated 9 months ago
- Test data to be used for automated testing with the nf-core pipelines☆130Updated this week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆280Updated 8 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆119Updated last year
- NGS Language Bindings☆119Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 4 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆168Updated this week
- A (mostly) universal methylation extractor for BS-seq experiments.☆171Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 3 weeks ago
- Example Nextflow pipelines and programming techniques☆107Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- ☆82Updated 6 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆103Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆99Updated last week
- software tools for haplotype assembly from sequence data☆219Updated 4 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Python package with helper tools for the nf-core community.☆260Updated this week