deweylab / MetaSRA-pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
☆43Updated last year
Alternatives and similar repositories for MetaSRA-pipeline:
Users that are interested in MetaSRA-pipeline are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last week
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- BAGEL software☆27Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆53Updated 11 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Differential Count Data Analysis Toolbox☆61Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- ☆25Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago