NCBI-Hackathons / Community_Software_Tools_for_NGS
☆62Updated 8 years ago
Alternatives and similar repositories for Community_Software_Tools_for_NGS:
Users that are interested in Community_Software_Tools_for_NGS are comparing it to the libraries listed below
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆78Updated 10 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆43Updated 4 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 3 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆70Updated 7 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 4 months ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- ☆82Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated last week
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- small RNA analysis from NGS data☆37Updated 5 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- ☆82Updated 2 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 7 months ago