NCBI-Hackathons / Community_Software_Tools_for_NGSLinks
☆63Updated 9 years ago
Alternatives and similar repositories for Community_Software_Tools_for_NGS
Users that are interested in Community_Software_Tools_for_NGS are comparing it to the libraries listed below
Sorting:
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated this week
- Galaxy RNA workbench☆40Updated 5 years ago
- Platypus Variant Caller☆108Updated last year
- small RNA analysis from NGS data☆37Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- My bioinfo toolbox☆50Updated 9 months ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 3 weeks ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆78Updated 11 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- ☆82Updated 6 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- ☆83Updated 3 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 11 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- ☆69Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆73Updated last month
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆48Updated 9 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago