Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
☆72Jun 27, 2026Updated 3 weeks ago
Alternatives and similar repositories for uta
Users that are interested in uta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- non-redundant, compressed, journalled, file-based storage for biological sequences☆52Nov 10, 2025Updated 8 months ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆291Updated this week
- Lightweight, portable variation registration and retrieval☆16Updated this week
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated 6 months ago
- Transcript versions for HGVS libraries☆36Jul 2, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Extensible specification for representing and uniquely identifying biological sequence variation☆96Jul 17, 2026Updated last week
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 7 years ago
- HGVS variant nomenclature checker☆99May 1, 2023Updated 3 years ago
- A crate for working with genomics chain files.☆15Updated this week
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Public repository for VariantValidator project☆82Updated this week
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Dec 26, 2022Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆206May 4, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆14Sep 3, 2019Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Updated this week
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆25Nov 19, 2019Updated 6 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆130Feb 13, 2020Updated 6 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Website to analyze conflicting assertions in ClinVar☆20Mar 16, 2026Updated 4 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆730Jul 1, 2026Updated 3 weeks ago
- ☆28Oct 7, 2025Updated 9 months ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- GA4GH Variation Representation Python Implementation☆61Jul 17, 2026Updated last week
- ☆69Jun 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Extension for Jupyter which integrates igv.js☆154Jun 2, 2026Updated last month
- A port of biocommons/hgvs to the Rust programming language☆18Jun 29, 2026Updated 3 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- Central repository for the VICC metakb web application☆15Updated this week