biocommons / utaLinks
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
☆71Updated this week
Alternatives and similar repositories for uta
Users that are interested in uta are comparing it to the libraries listed below
Sorting:
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 3 months ago
- Transcript versions for HGVS libraries☆33Updated 3 months ago
- GA4GH Variation Representation Python Implementation☆61Updated this week
- C++ Library to parse Illumina InterOp files☆80Updated last month
- Annotation of VCF variants with functional impact and from databases (executable+library)☆64Updated last week
- Extensible specification for representing and uniquely identifying biological sequence variation☆94Updated this week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆85Updated last month
- Simple vcf parser, based on PyVCF☆48Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago
- Public repository for VariantValidator project☆79Updated 3 weeks ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- HGVS variant nomenclature checker☆98Updated 2 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Updated 5 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- Website to analyze conflicting assertions in ClinVar☆19Updated 2 weeks ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- ☆69Updated 3 years ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago