biocommons / uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
☆64Updated last month
Alternatives and similar repositories for uta:
Users that are interested in uta are comparing it to the libraries listed below
- non-redundant, compressed, journalled, file-based storage for biological sequences☆41Updated 3 weeks ago
- Transcript versions for HGVS libraries☆30Updated 3 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 3 weeks ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- GA4GH Variation Representation Python Implementation☆55Updated last week
- Assembly Based ReAligner☆73Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆87Updated last week
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- HGVS variant nomenclature checker☆98Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆158Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 7 months ago
- Read visualizer for structural variants☆83Updated 6 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- A modular annotation tool for genomic variants☆120Updated 2 weeks ago