Alternatives and similar repositories for SO-Ontologies

Users that are interested in SO-Ontologies are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆90Updated 3 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated last week
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆20Updated last week
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆219Updated last week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated this week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 3 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 7 months ago
• galaxyproject / bioblend
  A Python library for interacting with the Galaxy API
  ☆93Updated 3 weeks ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 2 months ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last month
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆125Updated last month
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆76Updated last week
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆42Updated 3 months ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated last week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆163Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 4 months ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated last month
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆78Updated last month
• mutalyzer / mutalyzer2
  HGVS variant nomenclature checker
  ☆98Updated 2 years ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated last month
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 2 months ago
• nf-core / raredisease
  Call and score variants from WGS/WES of rare disease patients.
  ☆104Updated this week
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 3 weeks ago