grst / snakemake_nextflow_wdl
simple comparison of snakemake, nextflow and cromwell/wdl
☆46Updated 4 years ago
Related projects: ⓘ
- Tip and tricks for BAM files☆82Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- QDNAseq package for Bioconductor☆45Updated last month
- Clinical interpretation of somatic mutations in cancer☆42Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- ☆65Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆31Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- for visual evaluation of read support for structural variation☆49Updated 3 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Burden testing against public controls☆49Updated 6 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Generic human DNA variant annotation pipeline☆55Updated 7 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- ☆18Updated this week
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆64Updated 2 weeks ago
- TIDDIT - structural variant calling☆66Updated 2 months ago
- Workflows for converting between sequence data formats☆36Updated 3 years ago
- R package designed to simplify structural variant analysis☆68Updated 2 years ago
- CN-Learn☆29Updated 4 years ago
- Tumor Mutational Burden☆50Updated 3 weeks ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆65Updated 3 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆28Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆39Updated 9 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated 3 months ago