simple comparison of snakemake, nextflow and cromwell/wdl
☆50Aug 6, 2020Updated 5 years ago
Alternatives and similar repositories for snakemake_nextflow_wdl
Users that are interested in snakemake_nextflow_wdl are comparing it to the libraries listed below
Sorting:
- R and RStudio via conda packages in repo2docker☆32Jul 24, 2024Updated last year
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- ☆18May 19, 2022Updated 3 years ago
- Cromwell/WDL wrapper for Python☆58Feb 13, 2026Updated 3 weeks ago
- A repo to report issues and have discussions about the conda infrastructure☆13Mar 2, 2026Updated last week
- ☆15Apr 2, 2025Updated 11 months ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- PKSmart: Predicting PK properties using Chemical Structures☆18Sep 26, 2025Updated 5 months ago
- A conda-smithy repository for polars.☆12Feb 6, 2026Updated last month
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- ☆11Oct 7, 2025Updated 5 months ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Dec 23, 2022Updated 3 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16May 23, 2023Updated 2 years ago
- Workshop material for BioC Asia 2019☆13Dec 22, 2021Updated 4 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning …☆35Jan 16, 2026Updated last month
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- FHIR to OMOP using PySpark on AWS Glue☆14May 8, 2021Updated 4 years ago
- ☆15Aug 11, 2025Updated 6 months ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Sep 28, 2018Updated 7 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Oct 12, 2022Updated 3 years ago
- Colocalisation pipeline for Open Targets Genetics☆17Apr 8, 2022Updated 3 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- jinja2-enabled jupyter notebooks☆37Feb 13, 2026Updated 3 weeks ago
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Apr 12, 2022Updated 3 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 4 months ago
- A companion for the Cromwell Server☆20Mar 1, 2026Updated last week
- ☆16Jan 6, 2025Updated last year