Alternatives and similar repositories for admin-training

Users that are interested in admin-training are comparing it to the libraries listed below

• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆33Updated this week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated last week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 5 years ago
• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 5 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated last month
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 weeks ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆116Updated 5 years ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• usegalaxy-eu / ena-upload-cli
  ENA upload cli - script your Open Data upload to the European Nucleotide Archive
  ☆28Updated last week
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• usegalaxy-eu / website
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)
  ☆22Updated last week
• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆95Updated last week
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆125Updated 6 months ago
• BioContainers / workflows
  Bioinformatics curated workflows that use Biocontainers tools
  ☆19Updated 6 years ago
• TGAC / earlham-galaxytools
  Galaxy tools and workflows developed at the Earlham Institute
  ☆14Updated 7 months ago
• Ensembl / ensembl-tools
  Ensembl tools
  ☆35Updated 6 months ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated 10 months ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• galaxyproject / gxadmin
  Handy command line utility for Galaxy administrators
  ☆23Updated last month
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆15Updated 3 weeks ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆78Updated 7 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago