bio-excel / bioexcelLinks
☆13Updated 7 years ago
Alternatives and similar repositories for bioexcel
Users that are interested in bioexcel are comparing it to the libraries listed below
Sorting:
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- ☆25Updated 4 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- ☆19Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆13Updated 7 years ago
- k-mer similarity analysis pipeline☆21Updated 3 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Compare assembly graph file formats☆15Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- ☆37Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆26Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago