BioContainers / workflows
Bioinformatics curated workflows that use Biocontainers tools
☆19Updated 5 years ago
Alternatives and similar repositories for workflows
Users that are interested in workflows are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- ☆23Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- ☆22Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated this week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 3 weeks ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 4 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 7 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago