rkitchen / exceRpt
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
☆19Updated 4 years ago
Alternatives and similar repositories for exceRpt:
Users that are interested in exceRpt are comparing it to the libraries listed below
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- R package for genomic feature analysis and visualization☆75Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆54Updated 4 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆27Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 months ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- a set of NGS pipelines☆24Updated this week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆64Updated last month
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆28Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆40Updated last year
- An R interface to the MEME Suite☆47Updated 3 months ago
- ☆29Updated 5 years ago
- Differential Count Data Analysis Toolbox☆61Updated 11 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆58Updated 2 weeks ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆68Updated 3 weeks ago
- Multi-sample somatic variant caller☆49Updated 3 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago