Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
☆20Jan 13, 2021Updated 5 years ago
Alternatives and similar repositories for exceRpt
Users that are interested in exceRpt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Feb 16, 2026Updated last month
- An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.☆15Oct 19, 2022Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Jun 12, 2018Updated 7 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- ☆14Aug 31, 2016Updated 9 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- ☆15Aug 3, 2018Updated 7 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆32Nov 11, 2025Updated 4 months ago
- GFF3 format with miRNA and isomiR information from sequencing data☆16Aug 5, 2019Updated 6 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- We help each other to study single-cell data☆16Jan 23, 2025Updated last year
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆18Mar 16, 2026Updated last week
- Browser UI for REPtiLe - a shared REPL☆13May 14, 2019Updated 6 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 6 months ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- ☆17Feb 16, 2024Updated 2 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆13Feb 13, 2019Updated 7 years ago
- A script to sync an iCal/vcal calendar feed to a Google Calendar☆12Feb 27, 2019Updated 7 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- Example game for the advenjure engine☆10Oct 15, 2017Updated 8 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- 💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine☆37Jun 27, 2018Updated 7 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 2 years ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆15Apr 12, 2023Updated 2 years ago
- ☆14Jun 24, 2024Updated last year
- repo of all my TidalCycles code from live performances and frequent nightly music production explorations from 2021 onwards☆13Aug 22, 2025Updated 7 months ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago