Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
β20Jan 13, 2021Updated 5 years ago
Alternatives and similar repositories for exceRpt
Users that are interested in exceRpt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research π©β32Aug 22, 2023Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seqβ22Jul 31, 2023Updated 2 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.β12Apr 2, 2014Updated 12 years ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forestsβ11Jun 12, 2018Updated 7 years ago
- β16Sep 21, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- β14Aug 31, 2016Updated 9 years ago
- pipeline for the analysis of small RNA dataβ14Jun 24, 2019Updated 6 years ago
- Interpretable model of sub-cellular RNA localization.β12Dec 19, 2022Updated 3 years ago
- β16Aug 3, 2018Updated 7 years ago
- An integrated platform for modeling gene-regulatory dynamics and networksβ33Nov 11, 2025Updated 5 months ago
- Sample-specific CircRNA Viewerβ11Aug 15, 2018Updated 7 years ago
- GFF3 format with miRNA and isomiR information from sequencing dataβ17Aug 5, 2019Updated 6 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing dataβ11Jun 29, 2017Updated 8 years ago
- We help each other to study single-cell dataβ16Jan 23, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A computation framework designed to detect differential junctions usage between two groups at single cell levelβ13Feb 1, 2021Updated 5 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.β14Nov 19, 2019Updated 6 years ago
- β12Sep 24, 2020Updated 5 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing dataβ11Sep 26, 2024Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasetsβ23Apr 5, 2023Updated 3 years ago
- β15Aug 22, 2023Updated 2 years ago
- Various bioinformatics toolsβ20Oct 29, 2024Updated last year
- Full-length linear and circular transcript isoform reconstruction and quantificationβ11Jun 17, 2024Updated last year
- Browser UI for REPtiLe - a shared REPLβ13May 14, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decodingβ14Aug 27, 2025Updated 8 months ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing readsβ13Apr 8, 2026Updated 3 weeks ago
- β17Feb 16, 2024Updated 2 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiβ¦β13Feb 13, 2019Updated 7 years ago
- A computational workflow for exitron splicing identificationβ15Aug 30, 2024Updated last year
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power doβ¦β19Apr 27, 2026Updated last week
- A script to sync an iCal/vcal calendar feed to a Google Calendarβ12Feb 27, 2019Updated 7 years ago
- command lines tool to annotate miRNAs with a standard mirna/isomir namingβ19Apr 24, 2025Updated last year
- Example game for the advenjure engineβ10Oct 15, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nextflow implementation of SpliZβ15Aug 21, 2023Updated 2 years ago
- Generate and process BAM files from Illumina sequencing instrument filesβ23Feb 25, 2016Updated 10 years ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory β¦β15Apr 12, 2023Updated 3 years ago
- β14Jun 24, 2024Updated last year
- A Python3-base pipeline for translated circular RNA(circRNA) identificationβ20Oct 4, 2025Updated 7 months ago
- Temporal Pathway Synthesizerβ17Jun 28, 2024Updated last year
- β10Sep 14, 2023Updated 2 years ago