rkitchen / exceRptLinks
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
☆20Updated 4 years ago
Alternatives and similar repositories for exceRpt
Users that are interested in exceRpt are comparing it to the libraries listed below
Sorting:
- R package for genomic feature analysis and visualization☆79Updated 6 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 5 months ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆37Updated 3 months ago
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆23Updated 6 years ago
- Analysis pipeline for cancer sequencing data☆111Updated 6 months ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 12 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Transcript quantification import for modular pipelines☆141Updated last month
- An integrated R package to evaluate periodicity in large scale data☆29Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated last year
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 7 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆49Updated 3 months ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆67Updated 2 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆80Updated last year
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- An R interface to the MEME Suite☆53Updated 4 months ago
- ☆31Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- ☆61Updated 4 years ago
- ☆35Updated 9 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆47Updated 2 years ago