rkitchen / exceRptLinks
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
☆20Updated 4 years ago
Alternatives and similar repositories for exceRpt
Users that are interested in exceRpt are comparing it to the libraries listed below
Sorting:
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 7 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 5 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Updated 6 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Updated 4 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆31Updated 9 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Analysis pipeline for cancer sequencing data☆112Updated 7 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- An interactive web-tool for RNA-seq analysis☆70Updated 9 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆72Updated 2 years ago
- ☆50Updated 4 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆48Updated 2 years ago
- An R interface to the MEME Suite☆53Updated 6 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- ☆35Updated 9 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Updated 7 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 2 months ago