rajewsky-lab / find_circ2
Find circRNAs in RNA-seq data.
☆13Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for find_circ2
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- Demultiplexes a fastq.☆44Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆20Updated last year
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RiboPlotR package for Ribo-plot☆13Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆15Updated this week
- Estimate locus specific human LINE-1 expression.☆31Updated 2 years ago
- A computational workflow for exitron splicing identification☆13Updated 2 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated last year
- Tutorial Website☆53Updated 3 years ago
- RNA editing tests☆16Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated 2 weeks ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆16Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ☆19Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆17Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated 2 weeks ago
- ☆37Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago