Find circRNAs in RNA-seq data.
☆15Jul 5, 2016Updated 9 years ago
Alternatives and similar repositories for find_circ2
Users that are interested in find_circ2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool for identifying circular RNAs using RNA-Seq data☆12Aug 10, 2015Updated 10 years ago
- tools to find circRNAs in RNA-seq data☆46Nov 16, 2017Updated 8 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 8 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 6 years ago
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Misc. utilities☆11May 21, 2019Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- miRTrace☆12Jun 14, 2023Updated 2 years ago
- New version of JACUSA -> 2.0☆31Mar 6, 2026Updated last month
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 9 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆24Updated this week
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 7 years ago
- Common scripts☆15Apr 2, 2026Updated 2 weeks ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 3 months ago
- Script and pipeline for BRAINcode project☆17May 24, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆27Oct 17, 2018Updated 7 years ago
- An awesome tool to visualize snakemake rule graphs☆30Mar 12, 2026Updated last month
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Jul 3, 2018Updated 7 years ago
- ☆14Jul 7, 2023Updated 2 years ago
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆12Jul 13, 2016Updated 9 years ago
- A Quarto blog for Bioconductor community☆16Apr 9, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 3 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44May 11, 2017Updated 8 years ago
- ☆23May 16, 2020Updated 5 years ago
- ☆19Oct 23, 2023Updated 2 years ago
- Script to convert a Garmin FIT file (Versions 1 and 2) to a GPX file suitable for upload to Strava☆10May 12, 2017Updated 8 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Apr 3, 2026Updated 2 weeks ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago