Find circRNAs in RNA-seq data.
☆15Jul 5, 2016Updated 9 years ago
Alternatives and similar repositories for find_circ2
Users that are interested in find_circ2 are comparing it to the libraries listed below
Sorting:
- a tool for identifying circular RNAs using RNA-Seq data☆12Aug 10, 2015Updated 10 years ago
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 6 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- miRTrace☆11Jun 14, 2023Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 3 months ago
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 4 months ago
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- ☆23May 16, 2020Updated 5 years ago
- New version of JACUSA -> 2.0☆31Mar 2, 2026Updated last week
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Oct 17, 2018Updated 7 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Sep 16, 2025Updated 5 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆14Mar 2, 2026Updated last week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 7 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- ☆12Apr 5, 2022Updated 3 years ago
- Common scripts☆15Feb 16, 2026Updated 3 weeks ago
- ☆13Sep 22, 2017Updated 8 years ago
- UKRIN Kidney Analysis Toolbox☆12Mar 27, 2025Updated 11 months ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Jul 9, 2024Updated last year
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆11Feb 3, 2026Updated last month
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- An awesome tool to visualize snakemake rule graphs☆15Jan 9, 2026Updated 2 months ago
- miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis☆16Jun 29, 2025Updated 8 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 2 years ago
- Script to convert a Garmin FIT file (Versions 1 and 2) to a GPX file suitable for upload to Strava☆10May 12, 2017Updated 8 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago