Find circRNAs in RNA-seq data.
☆15Jul 5, 2016Updated 10 years ago
Alternatives and similar repositories for find_circ2
Users that are interested in find_circ2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool for identifying circular RNAs using RNA-Seq data☆12Aug 10, 2015Updated 10 years ago
- tools to find circRNAs in RNA-seq data☆47Nov 16, 2017Updated 8 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 9 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- circular RNA analysis toolset☆90Sep 8, 2024Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- Misc. utilities☆11May 21, 2019Updated 7 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- New version of JACUSA -> 2.0☆32Jun 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 8 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆73Jul 18, 2025Updated last year
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Long RNA-seq analysis workflow☆23Oct 13, 2025Updated 9 months ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Common scripts☆15Jun 24, 2026Updated last month
- Script and pipeline for BRAINcode project☆17May 24, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆12Jul 13, 2016Updated 10 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆27Oct 17, 2018Updated 7 years ago
- ☆25May 16, 2020Updated 6 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Jul 3, 2018Updated 8 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43May 11, 2017Updated 9 years ago
- ☆15Jul 7, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 6 months ago
- JAVA framework for accurate SNV assessment☆12Jun 28, 2021Updated 5 years ago
- Game code of python☆10Jun 24, 2025Updated last year
- ☆15Feb 5, 2025Updated last year
- ☆22Oct 23, 2023Updated 2 years ago
- Script to convert a Garmin FIT file (Versions 1 and 2) to a GPX file suitable for upload to Strava☆10May 12, 2017Updated 9 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆35Apr 3, 2026Updated 3 months ago