rajewsky-lab / find_circ2
Find circRNAs in RNA-seq data.
☆14Updated 8 years ago
Alternatives and similar repositories for find_circ2:
Users that are interested in find_circ2 are comparing it to the libraries listed below
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Tutorial Website☆55Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Fork of the Polysolver project☆30Updated 5 years ago
- Notes on ChIP-seq and other-seq-related tools☆23Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 5 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- IDR☆31Updated last year
- ☆38Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆61Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆27Updated last year
- direct comparison of circular and linear RNA expression☆20Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- ☆53Updated 3 years ago
- ☆19Updated 8 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- A list of alternative splicing analysis resources☆41Updated 2 months ago