rajewsky-lab / find_circ2
Find circRNAs in RNA-seq data.
☆14Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for find_circ2
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Tutorial Website☆53Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- Notes on ChIP-seq and other-seq-related tools☆22Updated 4 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- A list of alternative splicing analysis resources☆37Updated last week
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆34Updated 5 years ago
- ☆53Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated last week
- Pipeline for Somatic Variant Calling with WES and WGS data☆20Updated 6 months ago
- Demultiplexes a fastq.☆44Updated 3 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆26Updated 3 years ago