BaderLab / Cytoscape_workflows
collection of notebooks with different cytoscape workflows
☆49Updated 2 years ago
Alternatives and similar repositories for Cytoscape_workflows:
Users that are interested in Cytoscape_workflows are comparing it to the libraries listed below
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ☆57Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ☆79Updated last year
- ☆61Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- ☆54Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆75Updated last month
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- published papers with a lot of data☆67Updated last week
- ☆47Updated 3 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 8 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆59Updated 11 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆73Updated 3 years ago
- ☆60Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆28Updated 4 years ago
- ☆42Updated 3 years ago
- ☆37Updated 3 years ago