BaderLab / Cytoscape_workflowsLinks
collection of notebooks with different cytoscape workflows
☆50Updated 2 years ago
Alternatives and similar repositories for Cytoscape_workflows
Users that are interested in Cytoscape_workflows are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆45Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 5 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆33Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- ☆56Updated 5 years ago
- ☆63Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated last month
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- GLASS consortium☆42Updated 5 years ago
- Bayesian network plot for the enrichment analysis results☆67Updated last year
- Toolbox with R scripts☆38Updated 7 years ago
- An R interface to enrichR☆94Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- epigenome analysis to rank transcription factors☆33Updated 3 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- ☆90Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆99Updated last year