collection of notebooks with different cytoscape workflows
☆51Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for Cytoscape_workflows
Users that are interested in Cytoscape_workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆37Oct 7, 2024Updated last year
- Read HOMER motif analysis output in R.☆18Mar 1, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10May 14, 2026Updated 3 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- R package for WebGestalt☆38Aug 10, 2026Updated 2 weeks ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 4 months ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆75Apr 14, 2023Updated 3 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆17Apr 14, 2025Updated last year
- 学堂在线 课程视频及字幕 aria2下载脚本☆21Aug 27, 2017Updated 9 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 7 months ago
- ☆11Apr 6, 2022Updated 4 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- ☆136Aug 30, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Explore design matrices interactively with R/Shiny☆38Apr 28, 2026Updated 4 months ago
- ☆10Apr 30, 2019Updated 7 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆20Updated this week
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 4 months ago
- Course materials for the edX Data Analysis for Genomics☆36May 23, 2015Updated 11 years ago
- ☆12May 30, 2023Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆31May 28, 2019Updated 7 years ago
- A web app to create new drake projects☆20Feb 6, 2021Updated 5 years ago
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆24Dec 17, 2021Updated 4 years ago
- R package for specialised analysis of single cell data☆42Oct 14, 2022Updated 3 years ago
- ☆12Jun 28, 2024Updated 2 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- ☆14Nov 29, 2025Updated 9 months ago