BaderLab / Cytoscape_workflows
collection of notebooks with different cytoscape workflows
☆49Updated last year
Alternatives and similar repositories for Cytoscape_workflows:
Users that are interested in Cytoscape_workflows are comparing it to the libraries listed below
- ☆60Updated last year
- ☆57Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- ☆77Updated last year
- ☆53Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated this week
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆71Updated 3 years ago
- ☆64Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆19Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆60Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆29Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆36Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 2 weeks ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆36Updated 4 years ago
- ☆102Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago