bzhanglab / WebGestaltR

Related projects ⓘ

Alternatives and complementary repositories for WebGestaltR

• lagelab / Genoppi
  Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data
  ☆27Updated 6 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆48Updated last year
• snystrom / memes
  An R interface to the MEME Suite
  ☆46Updated last month
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆55Updated last week
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆61Updated 3 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 5 months ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆19Updated 6 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆53Updated 2 months ago
• YosefLab / ImpulseDE2
  ☆37Updated 2 years ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆36Updated last month
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 3 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated last month
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆85Updated 3 months ago
• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆59Updated 8 months ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆27Updated last year
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆24Updated last year
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆37Updated 2 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last week
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆19Updated 11 months ago
• slowkow / homerkit
  Read HOMER motif analysis output in R.
  ☆15Updated 6 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆38Updated 3 weeks ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆34Updated 8 months ago