navigate - open source light-sheet microscope controls
☆38Mar 16, 2026Updated this week
Alternatives and similar repositories for navigate
Users that are interested in navigate are comparing it to the libraries listed below
Sorting:
- A set of Qt-based widgets onto the pymmcore-plus model☆20Updated this week
- Pure python/C++ micro-manager ecosystem☆46Mar 13, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- ☆13Aug 16, 2024Updated last year
- napari plugin for trackastra☆17Nov 12, 2025Updated 4 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆24Oct 30, 2024Updated last year
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Mar 12, 2026Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆37Feb 1, 2026Updated last month
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- Scientific Dataset Quality Control and Data Exploration Tool☆21Updated this week
- Generate multifunctional and macro recordable GUIs from Python classes☆45Mar 5, 2026Updated 2 weeks ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- ☆26Jan 27, 2026Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆75Mar 2, 2026Updated 2 weeks ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 6 months ago
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated last week
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- OUT-OF-DATE! The new book is at https://bioimagebook.github.io☆21Jan 2, 2017Updated 9 years ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- A hub to start the next generation of Microscope Control Software☆59Jan 7, 2021Updated 5 years ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- Image acquisition software for mesoSPIM light-sheet microscopes.☆46Mar 13, 2026Updated last week
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆32Mar 12, 2026Updated last week
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated last month
- Files and assembly instructions for 3D printed microscopy imaging chambers. Work done by Ben Goodnow for Single Molecule Science at UNSW…☆25Mar 7, 2025Updated last year
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆107Mar 9, 2026Updated last week
- Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem☆19May 27, 2025Updated 9 months ago
- ☆37Mar 22, 2024Updated 2 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆67Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆91Mar 2, 2026Updated 2 weeks ago