TheDeanLab / navigateLinks
navigate - open source light-sheet microscope controls
☆37Updated this week
Alternatives and similar repositories for navigate
Users that are interested in navigate are comparing it to the libraries listed below
Sorting:
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆70Updated last month
- ☆51Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated this week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated this week
- napari plugin for trackastra☆17Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Pure python/C++ micro-manager ecosystem☆41Updated this week
- Browse your OMERO database from within napari.☆38Updated this week
- ☆46Updated this week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Running compute-intense parts of BigStitcher distributed☆26Updated 2 weeks ago
- ☆39Updated last month
- python tools for BigDataViewer☆22Updated 7 months ago
- MultiModal Big Image Data Sharing and Exploration☆16Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- 1d plotting in napari-based canvas.☆26Updated this week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 9 months ago
- ☆13Updated 5 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month