Kennedy-Lab-UW / Duplex-SequencingLinks
☆57Updated 5 years ago
Alternatives and similar repositories for Duplex-Sequencing
Users that are interested in Duplex-Sequencing are comparing it to the libraries listed below
Sorting:
- ☆41Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- ☆68Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- ☆78Updated 11 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Galaxy RNA workbench☆40Updated 4 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Software program for checking sample matching for NGS data☆132Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆36Updated 4 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago