Illumina / Nirvana
The nimble & robust variant annotator
☆178Updated last year
Alternatives and similar repositories for Nirvana:
Users that are interested in Nirvana are comparing it to the libraries listed below
- VarDict☆198Updated last year
- A structural variation pipeline for short-read sequencing☆187Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆240Updated 6 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last year
- Annotation and Ranking of Structural Variation☆252Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆147Updated this week
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- TransVar - multiway annotator for precision medicine☆125Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆136Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆375Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆316Updated 11 months ago
- Gene fusion detection and visualization☆122Updated 3 years ago
- Structural variation and indel detection by local assembly☆246Updated last month
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆221Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- Precision HLA typing from next-generation sequencing data☆197Updated last year
- ☆121Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- A tool for estimating repeat sizes☆192Updated last year
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Structural variant toolkit for VCFs☆355Updated last week
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 3 months ago