liugangcode / InfoAlign
The code for "Learning Molecular Representation in a Cell"
☆24Updated 3 weeks ago
Alternatives and similar repositories for InfoAlign:
Users that are interested in InfoAlign are comparing it to the libraries listed below
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆88Updated 2 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆95Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆23Updated 3 months ago
- ☆16Updated 3 weeks ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆60Updated 8 months ago
- ☆49Updated 6 months ago
- ☆84Updated 2 years ago
- A Modular Architecture for Deep Learning Systems☆40Updated this week
- ☆35Updated last year
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆48Updated last month
- A Text-guided Protein Design Framework, Nat Mach Intell 2025☆56Updated 2 months ago
- ☆16Updated 6 months ago
- Gene expression time-series extrapolation for heterogeneous data☆17Updated last year
- Work on designing a graph co-attention algorithm.☆18Updated last year
- ALL Molecular ML papers from ICLR'25.☆22Updated last week
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆37Updated 6 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆39Updated 10 months ago
- Protein structure datasets for machine learning.☆106Updated 8 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆39Updated 3 months ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆69Updated 2 months ago
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024☆25Updated 5 months ago
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆10Updated 4 months ago
- Paper collection for single cell foundation models☆30Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- Contextual AI models for single-cell protein biology☆82Updated last month
- ProtMamba: a homology-aware but alignment-free protein state space model☆57Updated 4 months ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆72Updated last year