BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
☆125Jul 6, 2025Updated last year
Alternatives and similar repositories for BioDiscoveryAgent
Users that are interested in BioDiscoveryAgent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Dec 18, 2024Updated last year
- A standard library for biological research.☆38Sep 2, 2025Updated last year
- Arc Virtual Cell Atlas☆586Updated this week
- LLM agents for working with the SRA and associated bioinformatics databases.☆182Jul 24, 2026Updated last month
- Comprehensive suite for evaluating perturbation prediction models☆155Jul 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆109Feb 10, 2026Updated 6 months ago
- The code for gene set analysis by accessing domain databases☆119Dec 25, 2025Updated 8 months ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆128Sep 27, 2025Updated 11 months ago
- ☆52Sep 23, 2025Updated 11 months ago
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆403Feb 1, 2025Updated last year
- ☆96Aug 10, 2026Updated 3 weeks ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 3 years ago
- Automated Hypothesis Testing with Agentic Sequential Falsifications☆289May 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆111Mar 16, 2026Updated 5 months ago
- ☆40Feb 24, 2026Updated 6 months ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆131Oct 3, 2025Updated 11 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆45Aug 21, 2024Updated 2 years ago
- Single-Cell (Perturbation) Model Library☆126Jul 27, 2026Updated last month
- Diffusion model for gene regulatory network inference.☆30Jul 19, 2026Updated last month
- Medea: An AI agent for therapeutic reasoning across biological contexts☆130Jul 17, 2026Updated last month
- Single-cell perturbation effects prediction benchmark☆103May 6, 2026Updated 3 months ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- ☆112Jul 14, 2026Updated last month
- ☆342Aug 16, 2026Updated 2 weeks ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆157Apr 28, 2026Updated 4 months ago
- Biomni: a general-purpose biomedical AI agent☆3,832Updated this week
- Conversational & memory-enabled AI research partner for multi-omics analysis. CLI + Desktop App (installers in Releases). From biological…☆160Jul 28, 2026Updated last month
- Benchmark for LLM-based Agents in Computational Biology☆141Oct 6, 2025Updated 10 months ago
- ☆38Feb 24, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆38Mar 1, 2026Updated 6 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆665Jul 24, 2026Updated last month
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- ☆30Oct 14, 2024Updated last year
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 8 months ago
- Explore the cancer relevance of your gene list☆56Aug 11, 2026Updated 3 weeks ago
- Discovering Data-driven Hypotheses in the Wild☆160Jun 9, 2025Updated last year