yuhui-zh15 / CellFluxLinks
Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)
☆19Updated 4 months ago
Alternatives and similar repositories for CellFlux
Users that are interested in CellFlux are comparing it to the libraries listed below
Sorting:
- ☆36Updated last year
- A Modular Architecture for Deep Learning Systems☆50Updated 7 months ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Updated this week
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆138Updated 4 months ago
- The code for "Learning Molecular Representation in a Cell"☆39Updated 10 months ago
- ☆59Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated 2 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Protein structure datasets for machine learning.☆114Updated 9 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆141Updated this week
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Updated last year
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆90Updated 2 years ago
- ☆26Updated 6 years ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated last year
- ☆134Updated last year
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆284Updated last month
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆96Updated 3 months ago
- Protein design and variant prediction using autoregressive generative models☆117Updated last year
- ☆54Updated 6 months ago
- Directed evolution of proteins in sequence space with gradients☆93Updated 3 months ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆63Updated 11 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆20Updated 3 years ago
- ☆32Updated 4 months ago
- Contrastive learning harmonizing protein language models and natural language models☆40Updated last year
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 4 years ago
- ☆74Updated last year
- A repository for reproducing experiments from the TxPert paper☆25Updated last week
- Cython implementation of PDB -> DataFrame parsing☆34Updated 3 weeks ago
- ☆39Updated last month