Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.
☆18Jan 26, 2026Updated 8 months ago
Alternatives and similar repositories for protein_set_transformer
Users that are interested in protein_set_transformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 3 months ago
- ☆97Feb 11, 2026Updated 8 months ago
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 9 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆22Dec 9, 2023Updated 2 years ago
- ☆16Oct 7, 2025Updated last year
- Webin command line submission program.☆43Updated this week
- Software to make and render molecular movie animations☆12Aug 3, 2019Updated 7 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆19Jun 12, 2025Updated last year
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆19Apr 16, 2026Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆42Aug 9, 2023Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆22Jul 14, 2023Updated 3 years ago
- Phage Annotation using Protein Structures☆175Oct 6, 2026Updated last week
- ☆16Mar 19, 2021Updated 5 years ago
- An awesome YAML-based CV that works with your existing Jekyll site☆11Jan 10, 2019Updated 7 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- A logistic regression model for testing differential abundance in compositional microbiome data☆13Jul 25, 2023Updated 3 years ago
- ☆39May 20, 2026Updated 4 months ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆20Apr 15, 2026Updated 5 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BiomeNED main code☆12Jul 25, 2019Updated 7 years ago
- Speech recognition in JavaScript