A eukaryotic genome annotation pipeline
☆14Oct 20, 2026Updated this week
Alternatives and similar repositories for eukan
Users that are interested in eukan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A C++ package that enables the bulk retrieval, processing, and assembly of transcriptome datasets☆12Jan 20, 2026Updated 9 months ago
- SV genotyper for long reads with a variation graph☆17Sep 28, 2026Updated 3 weeks ago
- genome annotation (RNAseq and TE) pipeline (draft)☆14Sep 17, 2026Updated last month
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Jan 22, 2025Updated last year
- Unsupervised Deep Gene Finding☆40Updated this week
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆23Jul 22, 2026Updated 3 months ago
- non-reference transposable element detection using sTELLeR☆13Nov 6, 2024Updated last year
- Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)☆10Apr 11, 2020Updated 6 years ago
- Homology-based reference genome acquisition and comparison☆19Oct 16, 2026Updated last week
- Paludamentum is the coat of the emperor - evidence processing pipeline☆11Oct 11, 2026Updated 2 weeks ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- ☆23Jan 13, 2026Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated last week
- ☆21Jul 12, 2026Updated 3 months ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- ☆28Jun 16, 2026Updated 4 months ago
- Eukaryote Genome Annotation☆28Oct 14, 2026Updated last week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated 2 weeks ago
- LorMe package for R:Lightening One-code Resolving Microbial Ecology Program☆19Jul 20, 2026Updated 3 months ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Telomere compliment tools☆27Nov 17, 2025Updated 11 months ago
- Deep Learning Framework for Transposable Element Discovery and Annotation☆12Aug 18, 2026Updated 2 months ago
- ☆12Jul 1, 2026Updated 3 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Organellar genome assembly☆33Sep 12, 2026Updated last month
- ☆14Sep 20, 2026Updated last month
- ☆12Jul 24, 2026Updated 3 months ago
- A nextflow pipeline for calling modifications in nanopore reads.☆17Updated this week
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Mar 24, 2025Updated last year
- a python package for finding tandem repeats from genomic sequences☆39Jun 11, 2026Updated 4 months ago
- ☆29May 12, 2026Updated 5 months ago
- Hands-free microbial genome assembly☆11Jul 11, 2018Updated 8 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆15Sep 6, 2023Updated 3 years ago
- PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies☆10Sep 5, 2026Updated last month
- ☆14Oct 15, 2026Updated last week