☆10Aug 18, 2024Updated 2 years ago
Alternatives and similar repositories for sylph-test
Users that are interested in sylph-test are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infe…☆10Feb 18, 2025Updated last year
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 3 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- SONAR is the algorithm of cell-type deconvolution for spatial transcriptomics☆10May 11, 2026Updated 5 months ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- ☆36Nov 2, 2023Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆29Sep 23, 2025Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆32Feb 21, 2022Updated 4 years ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- ☆10Oct 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ColabPCR: A validated Google Colaboratory Notebook for Reproducible and Precise Primer Design☆12May 4, 2026Updated 6 months ago
- ☆10Oct 31, 2022Updated 4 years ago
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming☆11Apr 6, 2021Updated 5 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆333Oct 10, 2026Updated 3 weeks ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Nanopore field sequencing pipeline for untargeted (aka. metagenomics) virus sequencing☆13Jun 29, 2026Updated 4 months ago
- ☆12Aug 15, 2025Updated last year
- A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-…☆11Jun 15, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- ☆15May 1, 2026Updated 6 months ago
- Benchmark dataset for bioinformatics tasks☆16Aug 17, 2026Updated 2 months ago
- Best-practice analysis pipeline for mapping reads to a (large) collections of genomes☆13Oct 26, 2026Updated last week
- This repository is for CellBin research group☆37Updated this week
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆12Sep 26, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MintTea: A pipeline for identifying multi-omic disease associated modules in microbiome data☆10Apr 26, 2025Updated last year
- ☆33Apr 25, 2022Updated 4 years ago
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- ☆13Nov 20, 2023Updated 2 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Updated this week