Generate HCR-style Probe Pairs for mRNA visualization
☆46Sep 19, 2023Updated 2 years ago
Alternatives and similar repositories for insitu_probe_generator
Users that are interested in insitu_probe_generator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 25, 2019Updated 6 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- ☆12Jul 15, 2022Updated 3 years ago
- ☆14Nov 29, 2025Updated 4 months ago
- Build unbiased anatomical templates from individual images☆12Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jun 25, 2021Updated 4 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 6 months ago
- ☆10Dec 11, 2024Updated last year
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Nov 18, 2024Updated last year
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- ☆17Jun 27, 2024Updated last year
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Some useful gadgets☆11Mar 14, 2022Updated 4 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Mar 3, 2026Updated 3 weeks ago
- ☆20Jun 26, 2025Updated 9 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ImageJ convenience layer for N5☆19Updated this week
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆16Jan 1, 2026Updated 2 months ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Mar 8, 2024Updated 2 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 10 months ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆16May 18, 2023Updated 2 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Aug 1, 2021Updated 4 years ago
- A probabilistic data structure implemented in python☆12Nov 20, 2019Updated 6 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆82Aug 16, 2025Updated 7 months ago
- ImageJ macro for microglia morphology analysis☆17Mar 17, 2026Updated last week
- Variational autoencoder (VAE) for image analysis, built in keras☆11Jul 21, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scRNAseq clustering tool☆11Apr 14, 2020Updated 5 years ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Sep 5, 2019Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆13Jun 29, 2025Updated 9 months ago
- 10x Genomics analysis guides files☆30Mar 13, 2026Updated 2 weeks ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆13Feb 23, 2018Updated 8 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year