rwnull / insitu_probe_generator
Generate HCR-style Probe Pairs for mRNA visualization
☆36Updated last year
Alternatives and similar repositories for insitu_probe_generator:
Users that are interested in insitu_probe_generator are comparing it to the libraries listed below
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- ☆105Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Detect doublets in single-cell RNA-seq data☆144Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆69Updated 11 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆52Updated last week
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆82Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆76Updated 3 weeks ago
- Clustering scRNAseq by genotypes☆175Updated 4 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month
- trajectory inference☆97Updated 2 months ago
- Tools for single-cell data processing☆122Updated 10 months ago
- Test genes for Spatial Variation☆161Updated 10 months ago
- ☆104Updated 2 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆20Updated 7 years ago
- Java tools for analyzing Drop-seq data☆125Updated last month
- ☆61Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆130Updated last week
- ☆71Updated this week
- Conversion between scRNA-seq objects☆166Updated last week
- Convert Seurat objects to 10x Genomics Loupe files.☆114Updated last month
- Doublet detection in single-cell RNA-seq data.☆91Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆122Updated 4 months ago