Generate HCR-style Probe Pairs for mRNA visualization
☆46Sep 19, 2023Updated 2 years ago
Alternatives and similar repositories for insitu_probe_generator
Users that are interested in insitu_probe_generator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 25, 2019Updated 6 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 9 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Oct 19, 2022Updated 3 years ago
- 🧬Genomes to proteins, multi-level visualization library☆16May 22, 2026Updated last week
- ☆12Jul 15, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Build unbiased anatomical templates from individual images☆12May 5, 2026Updated 3 weeks ago
- ☆10Jun 25, 2021Updated 4 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 8 months ago
- ☆10Dec 11, 2024Updated last year
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated last month
- ☆17Jun 27, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Jan 22, 2026Updated 4 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15May 5, 2026Updated 3 weeks ago
- ☆20Jun 26, 2025Updated 11 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ImageJ convenience layer for N5☆21May 21, 2026Updated last week
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆17Jan 1, 2026Updated 4 months ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- ☆14Mar 8, 2024Updated 2 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆17May 18, 2023Updated 3 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated 11 months ago
- ☆10Jul 23, 2020Updated 5 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A probabilistic data structure implemented in python☆12Nov 20, 2019Updated 6 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆28Apr 6, 2026Updated last month
- Algorithm For Gene Order Reconstruction in Ancestors☆83Aug 16, 2025Updated 9 months ago
- ImageJ macro for microglia morphology analysis☆18Apr 3, 2026Updated last month
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆51Aug 1, 2021Updated 4 years ago
- Variational autoencoder (VAE) for image analysis, built in keras☆11Jul 21, 2022Updated 3 years ago
- ☆21Nov 9, 2023Updated 2 years ago