Generate HCR-style Probe Pairs for mRNA visualization
☆49Sep 19, 2023Updated 2 years ago
Alternatives and similar repositories for insitu_probe_generator
Users that are interested in insitu_probe_generator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 25, 2019Updated 7 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- Tools and scripts for EASI-FISH image data analysis☆17Jul 24, 2026Updated last month
- ☆13Jul 15, 2022Updated 4 years ago
- 🧬Genomes to proteins, multi-level visualization library☆17May 22, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Nov 29, 2025Updated 9 months ago
- Build unbiased anatomical templates from individual images☆13Aug 23, 2026Updated 2 weeks ago
- ☆10Dec 11, 2024Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆36Apr 15, 2026Updated 4 months ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 8 months ago
- ☆20Jun 26, 2025Updated last year
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Aug 11, 2026Updated 3 weeks ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial…☆70Jun 1, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆10Jul 23, 2020Updated 6 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆17May 18, 2023Updated 3 years ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆51Aug 1, 2021Updated 5 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆20May 26, 2025Updated last year
- Evolutionary Sparse Learning - Paired Species Contrast☆17Jul 22, 2026Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆54Feb 4, 2025Updated last year
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated last month
- ☆13Feb 27, 2024Updated 2 years ago
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆65Sep 5, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- ☆22Nov 9, 2023Updated 2 years ago
- Variational autoencoder (VAE) for image analysis, built in keras☆11Jul 21, 2022Updated 4 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 8 months ago