katemartian / Photometry_data_processingLinks
☆27Updated 2 years ago
Alternatives and similar repositories for Photometry_data_processing
Users that are interested in Photometry_data_processing are comparing it to the libraries listed below
Sorting:
- Code for Functional Mixed Models for Fiber Photometry☆13Updated 3 months ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- Fiber photometry data preprocessing - denoising, photobleaching and motion correction.☆27Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆52Updated last year
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- pyqt5 dependent applications for IBL sessions☆31Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 5 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆67Updated this week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆105Updated this week
- pyControl GUI and framework code☆29Updated last week
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆71Updated 2 weeks ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 3 years ago
- Histology processing☆71Updated 2 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 9 months ago
- IBL core shared libraries☆64Updated last week
- Fiber Photometry Modular Analysis Tool Suite☆41Updated 4 years ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Registration of cells across sessions.☆75Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆49Updated 6 months ago
- A curated list of awesome Neuropixels resources.☆118Updated 3 weeks ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year