Alternatives and similar repositories for bento

Users that are interested in bento are comparing it to the libraries listed below

• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 9 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆178Updated 3 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• petersaj / AP_histology
  Histology processing
  ☆71Updated last month
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated 2 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆238Updated 6 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆60Updated last month
• YttriLab / A-SOID
  An active learning platform for expert-guided, data efficient discovery of behavior.
  ☆63Updated 4 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 3 weeks ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆52Updated 4 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 3 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆78Updated 6 months ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆103Updated 2 weeks ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆60Updated 2 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 10 months ago
• ThomasAkam / Point_Grey_Bonsai_multi_camera_acquisition
  Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.
  ☆15Updated 7 months ago
• dattalab / keypoint-moseq
  ☆97Updated last week
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆137Updated 4 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆108Updated this week
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆407Updated 2 months ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆26Updated last week