neuroethology / bentoLinks
☆12Updated last year
Alternatives and similar repositories for bento
Users that are interested in bento are comparing it to the libraries listed below
Sorting:
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 2 weeks ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- ☆52Updated last year
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Registration of cells across sessions.☆75Updated last year
- Histology processing☆72Updated last month
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Brainways☆22Updated 4 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆33Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 10 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- A Python interface to access neuroanatomical atlases☆170Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆66Updated 7 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆39Updated 4 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆110Updated 5 months ago