Alternatives and similar repositories for bento

Users that are interested in bento are comparing it to the libraries listed below

• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 11 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• bonsai-rx / deeplabcut
  A Bonsai interface for real-time markerless pose estimation using DeepLabCut
  ☆53Updated 7 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆30Updated 2 years ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 5 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆240Updated 8 months ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆60Updated 3 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated last week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 3 weeks ago
• dattalab / keypoint-moseq
  ☆101Updated 2 months ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆38Updated 3 weeks ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆168Updated last week
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆106Updated last week
• jbohnslav / deepethogram
  ☆116Updated 4 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 3 months ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆74Updated 5 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 8 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 5 months ago
• nel-lab / FIOLA
  ☆34Updated 7 months ago
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 6 months ago
• EthoML / VAME
  Variational Animal Motion Embedding - A tool for time series embedding and clustering
  ☆39Updated 3 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago