neuroethology / bentoLinks
☆12Updated last year
Alternatives and similar repositories for bento
Users that are interested in bento are comparing it to the libraries listed below
Sorting:
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆52Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Histology processing☆71Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆34Updated 6 months ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Brainways☆22Updated 3 months ago
- Automated 3D cell detection in very large images☆222Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆52Updated 6 months ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 9 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆64Updated 6 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago
- ☆100Updated last month
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year