QijinYin / DeepHistone
☆17Updated 6 years ago
Alternatives and similar repositories for DeepHistone:
Users that are interested in DeepHistone are comparing it to the libraries listed below
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- ☆18Updated 2 years ago
- Knowledge-primed neural networks☆35Updated 2 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last month
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 10 months ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆52Updated 4 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- ☆31Updated 5 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 6 years ago
- MHC Class I and Class II neoantigen binding prediction☆28Updated 2 years ago
- DeepSEA in TensorFlow☆29Updated 7 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- The R Bioconductor package for scMAGeCK.☆12Updated 11 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆22Updated 2 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- ☆38Updated 4 years ago
- ☆22Updated 7 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆47Updated 2 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆37Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆61Updated last year