Alternatives and similar repositories for cyto-dl:

Users that are interested in cyto-dl are comparing it to the libraries listed below

• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 8 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 3 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆50Updated 8 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆103Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆29Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆29Updated last week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆54Updated this week
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated last year
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• weigertlab / trackastra
  ☆59Updated this week
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆21Updated last year
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆54Updated this week
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated 3 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated last month
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆27Updated 3 weeks ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆34Updated this week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 5 months ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆56Updated this week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated this week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆33Updated 2 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆37Updated 3 months ago
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆20Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆74Updated 3 weeks ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 3 months ago
• AllenCell / aics-shparam
  ☆20Updated this week