Alternatives and similar repositories for cyto-dl

Users that are interested in cyto-dl are comparing it to the libraries listed below

• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated last year
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last year
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆73Updated 2 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 8 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated this week
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆117Updated last week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated this week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated last month
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 4 months ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 4 months ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆34Updated 2 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last month
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆18Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 10 months ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last week
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 7 months ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆24Updated 2 years ago
• janelia-cellmap / dacapo
  A framework for easy application of established machine learning techniques on large, multi-dimensional images.
  ☆58Updated last month
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated 2 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆27Updated last month
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆70Updated 7 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year