AllenCellModeling / cyto-dl

Related projects ⓘ

Alternatives and complementary repositories for cyto-dl

• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 5 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆93Updated this week
• weigertlab / trackastra
  ☆51Updated this week
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆26Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆69Updated this week
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 4 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated this week
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated last year
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆48Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆18Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆80Updated last week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆21Updated last month
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆33Updated last week
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆19Updated 5 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆36Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆47Updated last week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆51Updated last year
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 2 weeks ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆20Updated last year
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆27Updated 3 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆51Updated 3 months ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆34Updated 2 weeks ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆20Updated 2 weeks ago
• CAREamics / careamics
  A deep-learning library for N2V and friends
  ☆30Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated last month
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆77Updated last month
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆28Updated this week