Alternatives and similar repositories for cyto-dl

Users that are interested in cyto-dl are comparing it to the libraries listed below

• royerlab / ultrack
  Cell tracking and segmentation software
  ☆140Updated 2 weeks ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 3 weeks ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆91Updated this week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• AllenCell / aics-ml-segmentation
  ☆32Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆55Updated 10 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆69Updated 10 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆50Updated last week
• gioda / FeARLesS
  4D reconstruction of developmental trajectories using spherical harmonics
  ☆23Updated 5 months ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 2 months ago
• haesleinhuepf / awesome-napari-plugins-that-are-not-on-the-napari-hub-yet
  ☆24Updated 2 years ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆44Updated 4 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆68Updated 11 months ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆67Updated this week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 10 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated this week
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated 4 months ago
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆27Updated last year
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆19Updated last year
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 2 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated 3 weeks ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 5 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 7 months ago
• e11bio / volara
  ☆36Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆123Updated last month