Alternatives and similar repositories for cyto-dl:

Users that are interested in cyto-dl are comparing it to the libraries listed below

• weigertlab / trackastra
  ☆58Updated last week
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆49Updated 7 months ago
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 7 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆102Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆28Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆19Updated last year
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆21Updated 4 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆48Updated 2 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated last week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆72Updated last month
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆53Updated 2 years ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆34Updated 2 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆28Updated last week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 3 months ago
• AllenCell / aics-ml-segmentation
  ☆30Updated 2 years ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆51Updated this week
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library using OpenCL
  ☆33Updated this week
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆40Updated this week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆35Updated 2 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆22Updated last month
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆81Updated last week
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆20Updated this week
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆21Updated 4 months ago
• MultimodalImagingCenter / MiC
  MiC is an ImageJ plugin to compare segmentation masks
  ☆17Updated 6 months ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year