Alternatives and similar repositories for aicspylibczi

Users that are interested in aicspylibczi are comparing it to the libraries listed below

• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated 11 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆57Updated last week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆38Updated last week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆142Updated 4 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 10 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆94Updated last month
• peng-lab / BaSiCPy
  ☆84Updated 3 months ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆54Updated last month
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 2 months ago
• haesleinhuepf / devbio-napari
  ☆51Updated 2 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated 2 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆92Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆45Updated this week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆54Updated 8 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 8 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆140Updated last month
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 9 months ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆28Updated last year
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 11 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆17Updated 2 months ago
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 9 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆32Updated 2 weeks ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆31Updated last month
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆135Updated last month
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 2 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 7 months ago