AllenCellModeling / aicspylibcziLinks
Python module utilizing libCZI for reading Zeiss CZI files.
☆43Updated 7 months ago
Alternatives and similar repositories for aicspylibczi
Users that are interested in aicspylibczi are comparing it to the libraries listed below
Sorting:
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated last week
- ☆51Updated 7 months ago
- native Python dataclasses for the OME data model☆64Updated last week
- ☆91Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- StarDist plugin for napari☆38Updated last year
- Bio-Formats image file format to raw format converter☆102Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆109Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- Browse your OMERO database from within napari.☆39Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆174Updated 6 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆33Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 11 months ago
- Command-line client for Fractal☆47Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆34Updated 2 weeks ago
- Read and write life sciences file formats☆142Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆95Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆217Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- GPU-accelerated Image Processing library for Python☆52Updated this week