Python module utilizing libCZI for reading Zeiss CZI files.
☆47Apr 14, 2025Updated 11 months ago
Alternatives and similar repositories for aicspylibczi
Users that are interested in aicspylibczi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Mar 16, 2026Updated last week
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Oct 15, 2025Updated 5 months ago
- Read Carl Zeiss image files (CZI).☆35Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated last month
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆107Mar 9, 2026Updated 2 weeks ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated 11 months ago
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆64Jan 30, 2026Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆162Mar 3, 2026Updated 2 weeks ago
- ImageJ/Fiji plugin to analyze 2D and 3D skeleton images☆28Jun 14, 2022Updated 3 years ago
- Tool for segmentation in bioimaging☆36Updated this week
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- Read and write ImageJ ROI format.☆87Feb 11, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Feb 19, 2026Updated last month
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated last week
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- cupy-accelerated DIPY☆11Mar 16, 2021Updated 5 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆65Mar 12, 2025Updated last year
- Read and write life sciences file formats☆142Jun 12, 2025Updated 9 months ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated 10 months ago
- Bio-Formats image file format to raw format converter☆103Updated this week
- Fractal backend☆19Updated this week
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 2 weeks ago