AllenCellModeling / aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
☆37Updated last week
Alternatives and similar repositories for aicspylibczi:
Users that are interested in aicspylibczi are comparing it to the libraries listed below
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- StarDist plugin for napari☆38Updated 8 months ago
- ☆71Updated last month
- Browse your OMERO database from within napari.☆36Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- native Python dataclasses for the OME data model☆56Updated last week
- Command-line client for Fractal☆45Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 3 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆33Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- ☆49Updated 6 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- QuPath extension for Cellsparse☆18Updated 4 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- Lectures for a napari training course☆50Updated last year
- Tools for distributed alignment of massive images☆81Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 7 months ago
- ☆23Updated last week
- Interface to the Bioformats Java library☆13Updated 3 months ago
- Bio-Formats image file format to raw format converter☆88Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- Easily read and write ome-tiff images in python☆27Updated 11 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆83Updated last week