AlexsLemonade / OpenPBTA-analysisLinks
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
☆104Updated 2 years ago
Alternatives and similar repositories for OpenPBTA-analysis
Users that are interested in OpenPBTA-analysis are comparing it to the libraries listed below
Sorting:
- R package containing useful functions for mutational signature analysis☆82Updated this week
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated last week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆98Updated last week
- A continually expanding collection of cancer genomics notes and data☆107Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- published papers with a lot of data☆73Updated 3 months ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Updated 5 years ago
- Explore and download data from the recount3 project☆36Updated 2 months ago
- ☆64Updated last year
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- A Python-based EGA download client☆101Updated 9 months ago
- ☆58Updated 4 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated last week
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- An R interface to enrichR☆92Updated 5 months ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- ☆61Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- R package for analysing proteomics data☆49Updated 2 years ago
- ☆117Updated last year