The analysis repository for the Open Pediatric Brain Tumor Atlas Project
☆107Jun 21, 2023Updated 2 years ago
Alternatives and similar repositories for OpenPBTA-analysis
Users that are interested in OpenPBTA-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 2 years ago
- Alignment workflow for Kids-First DRC☆11Feb 12, 2026Updated last month
- The analysis repository for the Open Pediatric Cancer Project☆25Jul 9, 2025Updated 8 months ago
- Onboarding materials for the Greene Lab☆32Feb 10, 2026Updated last month
- A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.☆72Mar 17, 2026Updated last week
- RNA-Seq workflow for Kids-First DRC☆12Sep 22, 2025Updated 6 months ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆204Jan 5, 2026Updated 2 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Somatic workflow for Kids-First☆15Mar 13, 2026Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆58Updated this week
- GLASS consortium☆42Jun 1, 2020Updated 5 years ago
- Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scienti…☆133Sep 3, 2024Updated last year
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Mar 16, 2026Updated last week
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Mar 16, 2026Updated last week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 6 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- ☆78Jul 12, 2023Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆14Aug 25, 2025Updated 6 months ago
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 4 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated 2 weeks ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆47Nov 18, 2025Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 4 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year