AlexsLemonade / OpenPBTA-analysisLinks
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
☆106Updated 2 years ago
Alternatives and similar repositories for OpenPBTA-analysis
Users that are interested in OpenPBTA-analysis are comparing it to the libraries listed below
Sorting:
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- An R interface to enrichR☆93Updated 9 months ago
- My youtube programming scripts☆58Updated 10 months ago
- published papers with a lot of data☆74Updated 7 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆75Updated 2 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated 2 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆78Updated 2 weeks ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- ☆62Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datase…☆113Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆79Updated 3 weeks ago
- GLASS consortium☆42Updated 5 years ago
- R package containing useful functions for mutational signature analysis☆86Updated this week
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Simplify functional enrichment results☆119Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- ☆63Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 8 months ago