Alternatives and similar repositories for OpenPBTA-analysis:

Users that are interested in OpenPBTA-analysis are comparing it to the libraries listed below

• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆80Updated this week
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆102Updated 8 years ago
• hbctraining / DGE_workshop_salmon
  ☆71Updated 3 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆103Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆170Updated 8 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• mskcc / RNAseqDB
  ☆141Updated 6 years ago
• d3b-center / OpenPedCan-analysis
  The analysis repository for the Open Pediatric Cancer Project
  ☆22Updated 2 weeks ago
• friedue / Notes
  Personal notes about work- and coding-related topics
  ☆20Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆143Updated last year
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆62Updated 6 months ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆72Updated 11 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆92Updated 5 months ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆96Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆91Updated 2 years ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆93Updated 4 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated 2 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆58Updated 10 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated last year
• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆67Updated last month
• TrinityCTAT / Trinity_CTAT
  ☆117Updated last year
• bcgsc / mirna
  microRNA profiling pipeline
  ☆75Updated 3 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆126Updated 7 months ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆147Updated 2 years ago
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆107Updated 4 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆107Updated 8 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year