d3b-center / OpenPedCan-analysisLinks
The analysis repository for the Open Pediatric Cancer Project
☆24Updated 4 months ago
Alternatives and similar repositories for OpenPedCan-analysis
Users that are interested in OpenPedCan-analysis are comparing it to the libraries listed below
Sorting:
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆87Updated 2 months ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆70Updated last year
- ☆74Updated 2 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆67Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆110Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last month
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 10 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated 5 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last week
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- SNV calling from single cell sequencing☆114Updated last year
- A docker image for single-cell analysis☆96Updated 3 weeks ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆116Updated 4 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated 2 weeks ago
- ☆30Updated 9 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆69Updated 5 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- ☆81Updated last year