A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
☆80Nov 2, 2026Updated this week
Alternatives and similar repositories for training-modules
Users that are interested in training-modules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆106Jun 21, 2023Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 4 years ago
- DE analysis module for Week3☆66Jul 24, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆22Updated this week
- Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scienti…☆135Aug 18, 2026Updated 2 months ago
- ☆11Dec 15, 2022Updated 3 years ago
- Materials for the August 2020 virtual R bootcamp at UC Berkeley. See below (under the listing of files) for information about the bootcam…☆18Sep 23, 2020Updated 6 years ago
- This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.☆23Mar 31, 2023Updated 3 years ago
- A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.☆12May 28, 2022Updated 4 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆20Updated this week
- ☆29May 20, 2023Updated 3 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆20Aug 4, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆19Updated this week
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 8 years ago
- R package to fetch and explore clinical trials data from freely available registries. Fetch data in bulk, customize data and build compre…☆20Sep 17, 2026Updated last month
- Materials for ShinyConf 2023 talk: Debugging With Shiny☆13May 10, 2023Updated 3 years ago
- Single cell RNA sequencing analysis course☆245Oct 27, 2026Updated last week
- Course on analysis of NGS data (RNA-Seq. and ATAC-Seq.) using Galaxy☆15May 24, 2021Updated 5 years ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 11 months ago
- An R package to create a pretty Copy Number Variant plot from a segments file☆11Feb 25, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A modular, containerized pipeline for ATAC-seq data processing☆61Oct 6, 2026Updated 3 weeks ago
- Quantitative Methods in Genetics and Genomics Course 2020☆23Mar 27, 2020Updated 6 years ago
- BiophysicsExpert is an educational tool that provides users with a searchable database of over 150 biophysics formulas, allowing them to …☆12Mar 17, 2025Updated last year
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆49Sep 29, 2025Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆92Jun 24, 2024Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Oct 5, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated 2 years ago
- RNAseq analysis pipeline☆28Updated this week
- Genomics Visualization Retrieval for Authoring with Multimodality☆18Jun 19, 2026Updated 4 months ago
- The Open Pediatric Cancer Project, maintained at Children's National☆15Oct 28, 2026Updated last week
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆81Nov 7, 2016Updated 9 years ago