magnusdv / quickped
An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPed also computes a variety of relatedness coefficients and offers verbal descriptions of pairwise relationships.
β23Updated 3 weeks ago
Alternatives and similar repositories for quickped:
Users that are interested in quickped are comparing it to the libraries listed below
- A set of tools to annotate VCF files with expression and readcount dataβ29Updated 5 months ago
- β23Updated 5 years ago
- πEvaluating, filtering, comparing, and visualising VCFβ27Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data setsβ37Updated 4 years ago
- Codes and Data for FFPEsig manuscriptβ15Updated last year
- β12Updated 10 months ago
- β39Updated 5 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analysesβ31Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learningβ15Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypesβ27Updated 7 months ago
- a set of NGS pipelinesβ24Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNAβ27Updated 8 months ago
- HTML5 pedigree/haplotype explorer, featuring a rich selection of comparison tools.β8Updated 4 years ago
- Pipeline for structural variant image curation and analysis.β48Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparisonβ29Updated 2 months ago
- Python package and routines for merging VCF filesβ29Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencingβ37Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needsβ30Updated last year
- Mapped QC analysis programβ43Updated 6 years ago
- Integrative analysis of complex structural variantsβ21Updated 4 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions β¦β17Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomesβ26Updated 6 years ago
- CADD-SV β a framework to score the effect of structural variantsβ14Updated 3 weeks ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studiesβ18Updated last year
- Pipeline for structural variation detection in cohortsβ49Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancerβ21Updated 4 years ago
- DriverPowerβ26Updated last month
- Structural variant (SV) analysis toolsβ35Updated 7 months ago
- β18Updated 2 years ago
- allele specific DNA methylation haplotype regionβ13Updated last year