Fast alignment tool based on bwa-mem
☆29Feb 22, 2026Updated 6 months ago
Alternatives and similar repositories for BWA-FastAlign
Users that are interested in BWA-FastAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆26Jan 21, 2026Updated 7 months ago
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆17Jan 12, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 11 months ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 6 months ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆189Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 6 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 6 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆42Apr 30, 2025Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- ☆14May 12, 2023Updated 3 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- ☆15Aug 16, 2025Updated last year
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- elPrep reimplementations in C++ and Java, only for benchmark comparisons☆10Feb 13, 2023Updated 3 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- ☆20Jan 13, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 2 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆23Mar 16, 2026Updated 5 months ago
- Estimate population history parameters from site pattern frequencies.☆13Aug 11, 2026Updated 2 weeks ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Aug 22, 2026Updated last week
- Pooled Sequencing Analysis for Sex Signal☆15Sep 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Dec 29, 2020Updated 5 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆12Mar 10, 2022Updated 4 years ago
- fork of the GPU genome aligner☆41Updated this week
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Darwin: A co-processor for long read alignment☆16Apr 5, 2019Updated 7 years ago