gsneha26 / Darwin-WGALinks
Co-processor for whole genome alignment
☆13Updated 5 years ago
Alternatives and similar repositories for Darwin-WGA
Users that are interested in Darwin-WGA are comparing it to the libraries listed below
Sorting:
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 7 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated 8 months ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Updated 2 years ago
- ☆14Updated 7 months ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 7 months ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆19Updated 6 years ago
- Darwin: A co-processor for long read alignment☆16Updated 6 years ago
- Falcon Accelerated Genomics Pipelines☆15Updated 5 years ago
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆22Updated 2 years ago
- generating hardware accelerators for pangenomic graph queries☆38Updated this week
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated 2 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆57Updated 6 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 8 years ago
- Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly☆17Updated last year
- A high-level performance analysis tool for FPGA-based accelerators☆20Updated 8 years ago
- GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis☆14Updated last year
- ☆23Updated 3 years ago
- Smith-Waterman Acceleration on Intel’s FPGA with OpenCL for Long DNA Sequences☆18Updated 6 years ago
- Image Registration on FPGAs☆21Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆19Updated last month
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆49Updated 3 years ago
- Falcon Merlin Compiler☆41Updated 5 years ago
- ☆19Updated 5 years ago
- Chisel Project for Integrating RTL code into SDAccel☆17Updated 7 years ago
- PAAS: A System Level Simulator for Heterogeneous (CPU-FPGA) Computing Systems☆43Updated 3 years ago