Yufeng98 / GenDPLinks
GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis
☆17Updated last year
Alternatives and similar repositories for GenDP
Users that are interested in GenDP are comparing it to the libraries listed below
Sorting:
- Darwin: A co-processor for long read alignment☆16Updated 6 years ago
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆32Updated 7 months ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated last year
- A PIM instrumentation, compilation, execution, simulation, and evaluation repository for BLIMP-style architectures.☆18Updated 3 years ago
- A pattern-based algorithmic autotuner for graph processing on GPUs.☆31Updated 5 months ago
- Source code for the evaluated benchmarks and proposed cache management technique, GRASP, in [Faldu et al., HPCA'20].☆18Updated 5 years ago
- G3: A Programmable GNN Training System on GPU☆43Updated 5 years ago
- PIM-ML is a benchmark for training machine learning algorithms on the UPMEM architecture, which is the first publicly-available real-worl…☆24Updated 11 months ago
- A Dataflow library for graph analytics acceleration☆14Updated 10 years ago
- ☆47Updated 3 years ago
- SparseP is the first open-source Sparse Matrix Vector Multiplication (SpMV) software package for real-world Processing-In-Memory (PIM) ar…☆77Updated 3 years ago
- ☆15Updated 4 months ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆14Updated 3 years ago
- Transforming Graphs for Efficient Irregular Graph Processing on GPUs☆51Updated 3 years ago
- Graph Pattern Mining☆93Updated last year
- Enterprise: Breadth-First Graph Traversal on GPUs. SC'15.☆32Updated 8 years ago
- Code for paper "Design Principles for Sparse Matrix Multiplication on the GPU" accepted to Euro-Par 2018☆73Updated 5 years ago
- A comprehensive content-addressable accelerator simulation framework.☆20Updated last year
- Graph Learning at Scale: Characterizing and Optimizing Pre-Propagation GNNs (MLSys'25)☆17Updated 8 months ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Updated 3 years ago
- Out-of-GPU-Memory Graph Processing with Minimal Data Transfer☆58Updated 3 years ago
- LonestarGPU: Irregular algorithms parallelized for GPUs☆38Updated 6 years ago
- ☆49Updated 8 months ago
- GARDENIA: Graph Analytics Repository for Designing Efficient Next-generation Accelerators☆34Updated 3 years ago
- ☆13Updated 2 years ago
- VASim is a virtual homogeneous non-deterministic finite automata automata simulator and transformation tool. VASim can parse, transform, …☆36Updated last year
- ☆69Updated 4 years ago
- ☆29Updated 8 years ago
- HeteroHalide: From Image Processing DSL to Efficient FPGA Acceleration☆15Updated 5 years ago
- ☆27Updated 6 years ago