Yufeng98 / GenDPLinks
GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis
☆17Updated 2 years ago
Alternatives and similar repositories for GenDP
Users that are interested in GenDP are comparing it to the libraries listed below
Sorting:
- Darwin: A co-processor for long read alignment☆16Updated 6 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated last year
- ☆15Updated 5 months ago
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆33Updated 9 months ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆32Updated 3 years ago
- A PIM instrumentation, compilation, execution, simulation, and evaluation repository for BLIMP-style architectures.☆18Updated 3 years ago
- A pattern-based algorithmic autotuner for graph processing on GPUs.☆32Updated 7 months ago
- A comprehensive content-addressable accelerator simulation framework.☆20Updated last year
- Modified version of PyTorch able to work with changes to GPGPU-Sim☆57Updated 3 years ago
- G3: A Programmable GNN Training System on GPU☆43Updated 5 years ago
- ☆13Updated 2 years ago
- VASim is a virtual homogeneous non-deterministic finite automata automata simulator and transformation tool. VASim can parse, transform, …☆36Updated last year
- PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping☆22Updated last year
- ☆27Updated 6 years ago
- Sparse kernels for GNNs based on TVM☆17Updated 5 years ago
- Source code for the evaluated benchmarks and proposed cache management technique, GRASP, in [Faldu et al., HPCA'20].☆18Updated 6 years ago
- A Dataflow library for graph analytics acceleration☆14Updated 10 years ago
- A graph linear algebra overlay☆51Updated 2 years ago
- ☆49Updated 9 months ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 8 years ago
- ☆17Updated 3 months ago
- Sharing the codebase and steps for artifact evaluation for ISCA 2023 paper☆15Updated last year
- Code for paper "Design Principles for Sparse Matrix Multiplication on the GPU" accepted to Euro-Par 2018☆73Updated 5 years ago
- ☆38Updated 7 months ago
- Graph Learning at Scale: Characterizing and Optimizing Pre-Propagation GNNs (MLSys'25)☆17Updated 10 months ago
- pLUTo is a DRAM-based Processing-using-Memory architecture that leverages the high density of DRAM to enable the massively parallel stori…☆18Updated 3 years ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆14Updated 3 years ago
- GARDENIA: Graph Analytics Repository for Designing Efficient Next-generation Accelerators☆34Updated 3 years ago
- Transforming Graphs for Efficient Irregular Graph Processing on GPUs☆50Updated 3 years ago
- SparseP is the first open-source Sparse Matrix Vector Multiplication (SpMV) software package for real-world Processing-In-Memory (PIM) ar…☆77Updated 3 years ago