readwrite112 / AGAThA
PPoPP24 AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping
☆13Updated 4 months ago
Related projects: ⓘ
- ☆16Updated 3 months ago
- ☆10Updated 8 months ago
- A benchmark suite to study the performance characteristics of genomics applications☆29Updated 10 months ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆12Updated 2 years ago
- ☆20Updated 3 months ago
- ☆27Updated 4 months ago
- ☆80Updated last month
- [HPCA'24] Smart-Infinity: Fast Large Language Model Training using Near-Storage Processing on a Real System☆33Updated 6 months ago
- Codebase for ICML'24 paper: Learning from Students: Applying t-Distributions to Explore Accurate and Efficient Formats for LLMs☆21Updated 2 months ago
- Darwin: A co-processor for long read alignment☆16Updated 5 years ago
- Open-source of LazyDP published in ASPLOS-2024☆21Updated 4 months ago
- NeuPIMs Simulator☆43Updated 3 months ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆30Updated last year
- LLMServingSim: A HW/SW Co-Simulation Infrastructure for LLM Inference Serving at Scale☆32Updated last month
- [DATE 2023] Pipe-BD: Pipelined Parallel Blockwise Distillation☆11Updated last year
- Artifact for USENIX ATC'23: TC-GNN: Bridging Sparse GNN Computation and Dense Tensor Cores on GPUs.☆44Updated 11 months ago
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆19Updated last year
- ☆32Updated last year
- Ginex: SSD-enabled Billion-scale Graph Neural Network Training on a Single Machine via Provably Optimal In-memory Caching☆34Updated 2 months ago
- PIM-DL: Expanding the Applicability of Commodity DRAM-PIMs for Deep Learning via Algorithm-System Co-Optimization☆18Updated 7 months ago
- FastFlow is a system that automatically detects CPU bottlenecks in deep learning training pipelines and resolves the bottlenecks with dat…☆25Updated last year
- ☆32Updated 2 months ago
- Processing-In-Memory (PIM) Simulator☆107Updated 2 months ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆16Updated 5 years ago
- ☆25Updated 3 months ago
- ☆14Updated last year
- MultiPIM: A Detailed and Configurable Multi-Stack Processing-In-Memory Simulator☆51Updated 3 years ago
- The simulator for SPADA, an SpGEMM accelerator with adaptive dataflow☆26Updated last year
- Fast and Efficient Model Serving Using Multi-GPUs with Direct-Host-Access (ACM EuroSys '23)☆51Updated 5 months ago
- ☆12Updated last year