divonlan / genozipLinks
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
☆168Updated 3 months ago
Alternatives and similar repositories for genozip
Users that are interested in genozip are comparing it to the libraries listed below
Sorting:
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆234Updated last week
- ☆123Updated 8 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆98Updated 3 weeks ago
- Python programs for processing GFF3 files☆98Updated last year
- A fast lossless FASTQ compressor with ultra-high compression ratio☆139Updated last month
- Long read production pipelines☆145Updated 2 weeks ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆112Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- DRAGEN open-source mapper☆176Updated last year
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆144Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆118Updated last year
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆115Updated last week
- Assembly and intrahost/low-frequency variant calling for viral samples☆138Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆269Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆232Updated this week
- ☆130Updated this week
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆138Updated last week
- Match up paired end fastq files quickly and efficiently.☆150Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆132Updated 11 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆190Updated this week
- Tools for plotting methylation data in various ways☆156Updated this week