divonlan / genozipLinks
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
☆169Updated 2 weeks ago
Alternatives and similar repositories for genozip
Users that are interested in genozip are comparing it to the libraries listed below
Sorting:
- ☆123Updated last month
- A structural variation pipeline for short-read sequencing☆194Updated this week
- Short-read and long-read sequencing tools for diagnostics☆165Updated this week
- The nimble & robust variant annotator☆185Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- Detecting contamination in NGS data and multi-species analysis☆78Updated 10 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆241Updated 2 months ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆117Updated last year
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- A tool for estimating repeat sizes☆197Updated last year
- Tools for plotting methylation data in various ways☆160Updated last month
- DRAGEN open-source mapper☆177Updated 2 years ago
- Structural variation and indel detection by local assembly☆246Updated this week
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆158Updated 2 years ago
- Jasmine: SV Merging Across Samples☆225Updated 9 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆150Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆166Updated last year
- Hierarchical Alignment Format☆171Updated last week
- A fast lossless FASTQ compressor with ultra-high compression ratio☆139Updated 3 months ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 6 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- Annotation and Ranking of Structural Variation☆262Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Graph realignment tools for structural variants☆161Updated 2 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago