Alternatives and similar repositories for LLM4BioHypoGen

Users that are interested in LLM4BioHypoGen are comparing it to the libraries listed below

• zhoujieli / Awesome-LLM-Agents-Scientific-Discovery
  A curated list of LLM powered AI Agents in Biomedical Research. Medical Image Analysis, Multi-omics Genomics Analysis, Biomedical Scienti…
  ☆53Updated 9 months ago
• HelloWorldLTY / MuSe-GNN
  [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"
  ☆30Updated 2 months ago
• zjunlp / InstructCell
  A Multi-Modal AI Copilot for Single-Cell Analysis with Instruction Following
  ☆31Updated 8 months ago
• zaixizhang / GeneBreaker
  Jailbreak Evo
  ☆18Updated 3 months ago
• mingyin0312 / RL4GenomeBench
  Official implementation for the paper "Toward Scientific Reasoning in LLMs: Training from Expert Discussions via Reinforcement Learning"
  ☆47Updated 3 months ago
• ncbi-nlp / cell-o1
  Code and data for Cell-o1.
  ☆23Updated 2 months ago
• zjunlp / ChatCell
  ChatCell: Facilitating Single-Cell Analysis with Natural Language
  ☆52Updated 3 months ago
• MBZUAI / AI4Bio-Reading-List
  Must-read papers on AI for Biology
  ☆19Updated last year
• addiewc / Sagittarius
  Gene expression time-series extrapolation for heterogeneous data
  ☆18Updated 2 years ago
• Liu-Hy / GenoTEX
  GenoTEX: A multi-task benchmark for LLM agentic methods in automated gene expression data analysis.
  ☆24Updated 5 months ago
• RyanWangZf / BioBridge
  ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs
  ☆73Updated last year
• Genentech / PerturbQA
  ☆23Updated 6 months ago
• jsxlei / scCLIP
  ☆30Updated last year
• HanwenXuTHU / BioTranslatorProject
  ☆33Updated 2 years ago
• yangzhao1230 / TACO
  TACO: TFBS-Aware Cis-Regulatory Element Optimization
  ☆18Updated last month
• snap-stanford / BioDiscoveryAgent
  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
  ☆87Updated 2 months ago
• OSU-NLP-Group / awesome-agents4science
  A curated list of papers on LLMs and agents for scientific research and development
  ☆72Updated 9 months ago
• zjunlp / Mol-Instructions
  [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
  ☆284Updated 10 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• MingyuJ666 / ProLLM
  [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…
  ☆66Updated 6 months ago
• ritaranx / ClinGen
  [ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation wi…
  ☆40Updated last year
• XueruiSu / Reproduce-DeepSeek-R1-Survey
  This repository collects various works that reproduce DeepSeek R1, as well as works related to DeepSeek R1 and the DeepSeek series.
  ☆18Updated 4 months ago
• SCIR-HI / ArtificiallyR2R
  Repository for AAAI 2024 paper "From Artificially Real to Real: Leveraging Pseudo Data from Large Language Models for Low-Resource Molecu…
  ☆22Updated last year
• mims-harvard / CUREBench
  CUREBench @ NeurIPS 2025: Benchmarking AI reasoning for therapeutic decision-making at scale
  ☆101Updated this week
• mandyyyyii / scibench
  ☆126Updated last year
• westlake-autolab / BioKGBench
  BioKGBench: A Knowledge Graph Checking Benchmark of AI Agent for Biomedical Science
  ☆21Updated 11 months ago
• RyanWangZf / LEADS
  A specialized LLM for study search, study screening, and data extraction from medical literature.
  ☆12Updated 6 months ago
• stellalisy / mediQ
  ☆30Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 8 months ago
• IDEA-XL / PRESTO
  PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomes [EMNLP 2024]
  ☆28Updated 10 months ago